Re: [bbuchfink/diamond] Build issue building latest version (#295)
On Wed, Mar 18, 2020 at 03:01:56PM -0700, Benjamin Buchfink wrote:
> >
> >
> > The package builds now. I admit I'd be happy if there would be any at least basic test suite to test the functionality. May be you could provide some simple data set and run the commands from README.md
> >
> > ```
> > diamond makedb --in nr.faa -d nr
> > diamond blastx -d nr -q reads.fna -o matches.m8
> > ```
> >
> > In Debian we are doing an effort to test all packages in the field of bioinformatics in a Continuous Integration environment. It would be helpful if this could be provided with some test you crafted and used yourself as author of the software.
> > Thanks a lot for your quick response, Andreas.
>
> Sorry it took this long. A test suite is finally available in the latest release. Run `diamond test`.
We should definitly try this. Unfortunately I get in cmake step:
undefined reference to 'pthread_create'
Any takers in Debian Med team are welcome. Salsa repository is updated.
Kind regards, Andreas.
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