Re: Request for backport: vg
On Wed, Feb 26, 2020 at 06:03:46AM +0100, Andreas Tille wrote:
> On Tue, Feb 25, 2020 at 10:17:30PM +0100, Michael Crusoe wrote:
> > gbp clone git@salsa.debian.org:med-team/vg.git -b debian/buster-backports
> >
> > A test build in a buster backports sbuild just succeeded.
> >
> > Should be already to upload and tag, thanks!
>
> ...
> Test Summary Report
> -------------------
> t/00_unittest.t (Wstat: 0 Tests: 1 Failed: 1)
> Failed test: 1
> t/02_vg_construct.t (Wstat: 0 Tests: 25 Failed: 1)
> Failed test: 24
> t/05_vg_find.t (Wstat: 0 Tests: 28 Failed: 1)
> Failed test: 24
> t/07_vg_map.t (Wstat: 0 Tests: 55 Failed: 1)
> Failed test: 54
> t/13_vg_sim.t (Wstat: 0 Tests: 14 Failed: 1)
> Failed test: 11
> t/16_vg_msga.t (Wstat: 0 Tests: 14 Failed: 2)
> Failed tests: 6, 11
> t/18_vg_call.t (Wstat: 0 Tests: 7 Failed: 2)
> Failed tests: 3, 7
> t/27_vg_genotype.t (Wstat: 0 Tests: 5 Failed: 1)
> Failed test: 3
> t/31_vg_add.t (Wstat: 0 Tests: 9 Failed: 3)
> Failed tests: 1-2, 5
> Files=48, Tests=605, 143 wallclock secs ( 0.18 usr 0.05 sys + 194.88 cusr 27.50 csys = 222.61 CPU)
> Result: FAIL
I should have written that there is an error like:
export PATH=$PATH:/build/vg-1.21.0+ds2/debian/help && . ./source_me.sh && cd test && prove -v t
Saw 2454536 1 at distance 0
Saw 2454534 1 at distance 0
Saw 2454535 1 at distance 0
Saw 2454533 1 at distance 1
Saw 2454530 1 at distance 27
Saw 2454532 1 at distance 27
Saw 2454531 1 at distance 27
Saw 2454529 1 at distance 28
Saw 2454527 1 at distance 59
Saw 2454528 1 at distance 59
Saw 2454526 1 at distance 60
index file /tmp/vg-P1nq4t/vg-6sEfPo.fai not found, generating...
ERROR: Signal 11 occurred. VG has crashed. Run 'vg bugs --new' to report a bug.
Stack trace path: /tmp/vg_crash_58wLfC/stacktrace.txt
Please include the stack trace file in your bug report!
t/00_unittest.t ........
1..1
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vg test is a Catch v1.8.2 host application.
Run with -? for options
-------------------------------------------------------------------------------
A VCF and FASTA on two contigs make a graph with a consistent ID space
-------------------------------------------------------------------------------
src/unittest/constructor.cpp:1225
...............................................................................
src/unittest/constructor.cpp:1225: FAILED:
due to a fatal error condition:
SIGSEGV - Segmentation violation signal
===============================================================================
test cases: 76 | 75 passed | 1 failed
assertions: 6805469 | 6805468 passed | 1 failed
not ok 1 - vg unit tests complete successfully
Kind regards
Andreas.
--
http://fam-tille.de
Reply to: