Typo in edam scopes or new format
Hi,
when inspecting UDD import logs I realised the following warnings:
$ grep "Unknown Edam scope in file" blends_prospective_gatherer.log
2019-04-07 23:46:18,355 - WARNING - (539): Unknown Edam scope in file '/srv/udd.debian.org/mirrors/machine-readable/b/bowtie.edam' of source 'bowtie' of debian-med: input.
2019-04-07 23:46:18,355 - WARNING - (539): Unknown Edam scope in file '/srv/udd.debian.org/mirrors/machine-readable/b/bowtie.edam' of source 'bowtie' of debian-med: output.
2019-04-07 23:46:18,355 - WARNING - (539): Unknown Edam scope in file '/srv/udd.debian.org/mirrors/machine-readable/b/bowtie.edam' of source 'bowtie' of debian-med: input.
2019-04-07 23:46:18,441 - WARNING - (539): Unknown Edam scope in file '/srv/udd.debian.org/mirrors/machine-readable/b/bowtie2.edam' of source 'bowtie2' of debian-med: input.
2019-04-07 23:46:18,441 - WARNING - (539): Unknown Edam scope in file '/srv/udd.debian.org/mirrors/machine-readable/b/bowtie2.edam' of source 'bowtie2' of debian-med: output.
2019-04-07 23:46:18,441 - WARNING - (539): Unknown Edam scope in file '/srv/udd.debian.org/mirrors/machine-readable/b/bowtie2.edam' of source 'bowtie2' of debian-med: input.
2019-04-07 23:46:18,441 - WARNING - (539): Unknown Edam scope in file '/srv/udd.debian.org/mirrors/machine-readable/b/bowtie2.edam' of source 'bowtie2' of debian-med: output.
2019-04-07 23:46:18,441 - WARNING - (539): Unknown Edam scope in file '/srv/udd.debian.org/mirrors/machine-readable/b/bowtie2.edam' of source 'bowtie2' of debian-med: input.
2019-04-07 23:46:18,441 - WARNING - (539): Unknown Edam scope in file '/srv/udd.debian.org/mirrors/machine-readable/b/bowtie2.edam' of source 'bowtie2' of debian-med: output.
2019-04-07 23:46:18,441 - WARNING - (539): Unknown Edam scope in file '/srv/udd.debian.org/mirrors/machine-readable/b/bowtie2.edam' of source 'bowtie2' of debian-med: input.
2019-04-07 23:46:18,441 - WARNING - (539): Unknown Edam scope in file '/srv/udd.debian.org/mirrors/machine-readable/b/bowtie2.edam' of source 'bowtie2' of debian-med: output.
2019-04-07 23:46:26,636 - WARNING - (539): Unknown Edam scope in file '/srv/udd.debian.org/mirrors/machine-readable/c/cd-hit.edam' of source 'cd-hit' of debian-med: input.
2019-04-07 23:46:26,636 - WARNING - (539): Unknown Edam scope in file '/srv/udd.debian.org/mirrors/machine-readable/c/cd-hit.edam' of source 'cd-hit' of debian-med: output.
Are these just typos in bowtie, bowtie2 and cd-hit or did you droped the
plural in the scope filed (the importer expects inputs and outputs with
plural 's' at the end).
Kind regards
Andreas.
--
http://fam-tille.de
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