[Help] Re: pbgenomicconsensus: autopkgtest regression

[Andreas Tille <andreas@an3as.eu>]

Control: reopen -1

Hi,

it seems my third attempt to fix the autopkgtest failed again. :-(

The nasty thing is that since the last two uploads the test worked in
the pbuilder environment which I'm usually use to build.  Before I
uploaded yesterday the debci log provided some information (missing
dependency from python-h5py) but when I look at

  https://ci.debian.net/data/autopkgtest/unstable/amd64/p/pbgenomicconsensus/2208809/log.gz

now it just has:

autopkgtest [15:40:15]: test command2:  cp -r Makefile tests $AUTOPKGTEST_TMP && cd $AUTOPKGTEST_TMP && make extra-tests
autopkgtest [15:40:15]: test command2: [-----------------------
# Tests that need to be run by Jenkins but are slowing
# down the development cycle, so aren't run by "tests"
# target.
PATH=`pwd`:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games cram --verbose --xunit-file=gc-extra-cram.xml `ls tests/cram/extra/*.t | grep -v arrow`
tests/cram/extra/plurality-fluidigm.t: passed
# Ran 1 tests, 0 skipped, 0 failed.
autopkgtest [15:40:22]: test command2: -----------------------]
autopkgtest [15:40:22]: test command2:  - - - - - - - - - - results - - - - - - - - - -
command2             PASS
autopkgtest [15:40:22]: @@@@@@@@@@@@@@@@@@@@ summary
command1             FAIL non-zero exit status 2
command2             PASS


I have no idea why command1 is failing.  Anybody who can reproduce
this test result and can fix this test?

Kind regards

         Andreas.

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