Re: Something for MoM, outreachy? TODO for workflows Fwd: bcbio_1.1.3-1_amd64.changes ACCEPTED into unstable
Hi Steffen,
On Thu, Mar 21, 2019 at 02:57:42PM +0100, Steffen Möller wrote:
> For a few tools, like kallisto, I was really suprised that we don't have
> it, yet.
It seems my colleagues also have some need for it thus its to late for a
MoM project. I've not yet fired up help2man for a simple manpage. What
I'm wondering is how to run the test:
kallisto/test(master) $ ls -1
chrom.txt
README.md
reads_1.fastq.gz
reads_2.fastq.gz
Snakefile
transcripts.fasta.gz
transcripts.gtf.gz
kallisto/test(master) $ snakemake
Building DAG of jobs...
ChildIOException:
File/directory is a child to another output:
/home/andreas/debian-maintain/salsa/med-team/0_prospective/kallisto/test/kallisto_out
/home/andreas/debian-maintain/salsa/med-team/0_prospective/kallisto/test/kallisto_out/abundance.h5
I admit I never used snakemake and may be I'm doing something wrong.
But its not very good in telling the user what's wrong here. Any
hint?
Kind regards
Andreas.
--
http://fam-tille.de
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