Re: problem with Abyss
On 14/02/2019 17:14, Andreas Tille wrote:
Hi Tony,
On Thu, Feb 14, 2019 at 01:02:07PM +0000, Tony Travis wrote:
It looks like "ABYSS-P" is missing from the "abyss" package:
root@beluga:~# apt policy abyss
abyss:
Installed: 2.0.2-3
Candidate: 2.0.2-3
Version table:
*** 2.0.2-3 500
500 http://gb.archive.ubuntu.com/ubuntu bionic/multiverse amd64 Packages
100 /var/lib/dpkg/status
Using ABYSS-P with MPI is documented on Salsa:
https://salsa.debian.org/med-team/abyss#parallel-processing
I have no idea about the Ubuntu version but the stretch version is
2.0.2-2 which sounds pretty close. My guess is that the build system
has some tweaks we missed to call to create ABYSS-P. Since I'm
currently swamped with other stuff: Would you mind filing a bug report
via
reportbug abyss
Hi, Andreas.
Well, "reportbug" notified me that a newer version of abyss 2.1.5-4 is
available in Debian testing (mine is abyss 2.0.2-3) so I decided not to
file a bug report, because "ABYSS-P" is present in that version:
https://packages.debian.org/buster/amd64/abyss/filelist
/usr/bin/DistanceEst
/usr/bin/abyss-fixmate
/usr/bin/abyss-pe
/usr/lib/abyss/ABYSS
/usr/lib/abyss/ABYSS-P
...
[...]
Is this a similar Ubuntu problem to "metaphlan2", which is still not in
Ubuntu-MATE 18.04 LTS?
Definitely not. But I'm very sorry, I have no idea how packages are
propagating to Ubuntu and why this is missing. :-(
Actually, I think it probably is a manifestation of the same problem:
Some packages are not imported automatically into Ubuntu from Debian
testing. I can make a 'sync' request but, this is not a Debian issue!
Maybe we can have a chat about the sync failure in Vilnius?
Bye,
Tony.
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