On Fri, Jan 25, 2019 at 09:35:36AM +0100, olivier sallou wrote:
> > I fixed htsjdk and pushed fixes to git. I have not yet uploaded however, I
> > want to test if picard-tools still builds with this version. Will upload if
> > everything is ok (though some other packages depending on it may fail if
> > something is broken in API... as usual....)
>
> Bad news. Building picard-tools with new htsjdk fails. Some ~40 tests are
> failing.
> Tried to rebuild picard-tools with current htsjdk (to be sure it was not
> related to an other updated lib), and it works. So issue is with new htsjdk.
>
> picard-tools and htsjdk are too "linked" with specific versions... ;-(
>
> It is not a compilation issue, but testing results, so I cannot detect what
> is the problem for picard with this new release.
>
> htsjdk code is up-to-date in git, but uploading this version would break
> picard-tools.
Picard-tools has also a little bit newer version than we have. Would
you mind checking latest upstream? I'd asume that the both latest
versions should match.
Kind regards
Andreas.
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