Re: Bug#937606: Droping Python2 support for Biopython
On Sat, Dec 21, 2019 at 07:41:53AM +0200, Graham Inggs wrote:
> > I've read that it is blocked due to the Python3.8 transition. If you
> > ask me this transition looks like not happening in the next 10 days
> > since several packages are looking like they would need some time.
> python-biopython is prevented from migrating by at least seqsero and srst2.
The versions in unstable are depending python3-biopython. The packages are
not migrating due to
seqsero/i386 unsatisfiable Depends: sra-toolkit 
Invalidated by dependency 
Invalidated by build-dependency
Build-Depends(-Arch): srst2 bowtie2 (not considered)
Depends: srst2 bowtie2 (not considered)
For the latter I wonder how bowtie can be helped to migrate since
the build log says:
./bowtie2-build --large-index --quiet .simple_tests.pl.fa .simple_tests.tmp
./bowtie2 --large-index -F 10,1 --quiet -a --reads-per-batch 4 -x .simple_tests.tmp .simple_tests.gz
E: Build killed with signal TERM after 150 minutes of inactivity
This is the same for all "slow" architectures and I wonder whether we
should exclude this test for certain architectures. A bit suspicious
is s390x which has a different issue which might need investigation.