Help with gradle needed (Was: Bug#923731: Any volunteer to fix the "usual" issues when upgrading to new version of igv?)
Hi,
any comment from Debian Java team?
Kind regards
Andreas.
On Mon, Sep 16, 2019 at 09:57:58AM +0200, Olivier Sallou wrote:
>
> On 9/13/19 3:43 PM, Andreas Tille wrote:
> > Hi,
> >
> > I upgraded the igv packaging Git[1] to the latest upstream version. I
> > never experienced a smooth upgrade to any igv version - but I always
> > experienced help from a Java expert here on the list. May be it is time
> > again to fix:
>
> I had a quick look, but no idea here.
>
> Related Java 11 module loading. Should ask debian Java team I think on
> hjow to handle this.
>
> Dependencies are in maven-repo, but gradle does not seem to find them as
> "modules" or related jar files are not seen as modules.
>
>
> Olivier
>
> >
> >
> > All input files are considered out-of-date for incremental task ':compileJava'.
> > Compiling with JDK Java compiler API.
> > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:7: error: module not found: ant
> > requires ant;
> > ^
> > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:8: error: module not found: com.google.common
> > requires com.google.common;
> > ^
> > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:9: error: module not found: commons.io
> > requires commons.io;
> > ^
> > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:10: error: module not found: commons.math
> > requires commons.math;
> > ^
> > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:12: error: module not found: gson
> > requires gson;
> > ^
> > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:13: error: module not found: htsjdk
> > requires htsjdk;
> > ^
> > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:22: error: module not found: log4j
> > requires log4j;
> > ^
> > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:23: error: module not found: org.apache.logging.log4j
> > requires org.apache.logging.log4j;
> > ^
> > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:24: error: module not found: org.apache.logging.log4j.core
> > requires org.apache.logging.log4j.core;
> > ^
> > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:25: error: module not found: swing.layout
> > requires swing.layout;
> > ^
> > 10 errors
> > :compileJava FAILED
> > :compileJava (Thread[Task worker for ':',5,main]) completed. Took 4.782 secs.
> >
> > FAILURE: Build failed with an exception.
> >
> >
> > The failures are looking like missing Build-Depends at first look but these
> > should be OK. Any volunteer?
> >
> > Kind regards
> >
> > Andreas.
> >
> >
> > [1] https://salsa.debian.org/med-team/igv
> >
> --
> Olivier Sallou
> Univ Rennes, Inria, CNRS, IRISA
> Irisa, Campus de Beaulieu
> F-35042 RENNES - FRANCE
> Tel: 02.99.84.71.95
>
> gpg key id: 4096R/326D8438 (keyring.debian.org)
> Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
>
>
--
http://fam-tille.de
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