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Bug#925902: unblock: cnvkit/0.9.5-3

Severity: normal
Usertags: unblock


This upload fixes bug #925568 about build reproducibility (failing). It simply add a small patch to fix the issue adds a metadata entry.
Waiting for a *go* to upload package to unstable.

Thanks
Olivier

debdiff result =>

debian@ccf6b68dd723:/opt/debian/build-area$ debdiff cnvkit_0.9.5-2.dsc cnvkit_0.9.5-3.dsc
dpkg-source: warning: extracting unsigned source package (/opt/debian/build-area/cnvkit_0.9.5-3.dsc)
diff -Nru cnvkit-0.9.5/debian/changelog cnvkit-0.9.5/debian/changelog
--- cnvkit-0.9.5/debian/changelog 2019-01-06 12:12:46.000000000 +0000
+++ cnvkit-0.9.5/debian/changelog 2019-03-27 08:00:39.000000000 +0000
@@ -1,3 +1,10 @@
+cnvkit (0.9.5-3) unstable; urgency=medium
+
+  * Fix buster rebuilds (Closes: #925568)
+    d/patches/controldir.patch
+
+ -- Olivier Sallou <osallou@debian.org>  Wed, 27 Mar 2019 08:00:39 +0000
+
 cnvkit (0.9.5-2) unstable; urgency=medium
 
   [ Jelmer Vernooij ]
diff -Nru cnvkit-0.9.5/debian/patches/controldir cnvkit-0.9.5/debian/patches/controldir
--- cnvkit-0.9.5/debian/patches/controldir 1970-01-01 00:00:00.000000000 +0000
+++ cnvkit-0.9.5/debian/patches/controldir 2019-03-27 08:00:39.000000000 +0000
@@ -0,0 +1,21 @@
+Subject: do not create dir if it exists
+Description: command tries to create an output dir during tests, even if it
+ already exists, raising an error. Skip creation if already present
+Author: Olivier Sallou <osallou@debian.org>
+Bug: 925568
+Forwaded: no
+Last-Updated: 2019-03-27
+--- a/cnvlib/commands.py
++++ b/cnvlib/commands.py
+@@ -1365,8 +1365,9 @@
+                             'anti' if 'antitarget' in fname else ''))
+         if args.output_dir:
+             if not os.path.isdir(args.output_dir):
+-                os.mkdir(args.output_dir)
+-                logging.info("Created directory %s", args.output_dir)
++                if not os.path.exists(args.output_dir):
++                    os.mkdir(args.output_dir)
++                    logging.info("Created directory %s", args.output_dir)
+             outfname = os.path.join(args.output_dir, outfname)
+         tabio.write(garr, outfname)
+ 
diff -Nru cnvkit-0.9.5/debian/patches/series cnvkit-0.9.5/debian/patches/series
--- cnvkit-0.9.5/debian/patches/series 2019-01-06 09:41:24.000000000 +0000
+++ cnvkit-0.9.5/debian/patches/series 2019-03-27 08:00:39.000000000 +0000
@@ -1,3 +1,4 @@
 no-py-ext
 python3compat.patch
 spelling
+controldir
diff -Nru cnvkit-0.9.5/debian/upstream/metadata cnvkit-0.9.5/debian/upstream/metadata
--- cnvkit-0.9.5/debian/upstream/metadata 2018-06-19 21:48:37.000000000 +0000
+++ cnvkit-0.9.5/debian/upstream/metadata 2019-03-27 08:00:39.000000000 +0000
@@ -19,6 +19,6 @@
  - Name: OMICtools
    Entry: OMICS_11538
  - Name: bio.tools
-   Entry: NA
- - Name: bio.tools
+   Entry: cnvkit
+ - Name: SciCrunch
    Entry: NA



-- 
gpg key id: 4096R/326D8438  (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335  D26D 78DC 68DB 326D 8438
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