Re: PIQUE packaging (Was: request for r-cran packages)
On 20/03/2019 16:04, Andreas Tille wrote:
Hi Tony,
On Wed, Mar 20, 2019 at 01:48:05PM +0100, Andreas Tille wrote:
Yes, that would be great if you're willing, but I would struggle to do it on
my own despite you explaining to me several times what to do...
Its a pleasure for me to look at this once you fixed
https://github.com/tony-travis/PIQUE/issues/3
That was quick. :-)
Hi, Andreas.
I've also pushed some changes for Ubuntu 18.04 LTS that were pending,
and I tested installation using Michael Maruter's R 3.5 PPA instead of
using the 3.4 versions in the Ubuntu repos, because the r-cran packages
that I want are supported for R 3.5 in Ubuntu 'bionic' and thinking of
the future, I want to move everything to R 3.5 for Bio-Linux...
Here are my next questions:
1. Could you please join me in bothering the emmax author again?
That's definitely a prerequisite for PIQUE packaging.
Yes, of course, but my work-around is just to download it.
2. Is there any description of PIQUE that could be used as long
description for the package. I've checked doc/pique_manual.odt
but despite its filename it says it is the ParSNP manual
(btw, parsnp is packaged) and doc/pique_tutorial.odt does
also not contain anything that would enlighten me about PIQUE
at first sight.
Feel free to simply replace the FIXME in
https://salsa.debian.org/med-team/pique/blob/master/debian/control
Yes, I'll sort that out: We called it "ParSNP" at first, but I
subsequently discovered that someone has already used that name!
3. I do not see any need to install the files in etc/profile.d or
am I missing something?
That's only there because, at present, PIQUE is installed in:
/usr/local/pique
If it's packaged and installed using "apt" they are not needed.
Thanks for packaging PIQUE,
Tony.
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