Hi,
we updated picard-tools (there is another micro release, thought) but
htsjdk is lagging behind upstream. I've commited the last version to
Git but there are failing tests. Any volunteer?
I fixed htsjdk and pushed fixes to git. I have not yet uploaded however, I want to test if picard-tools still builds with this version. Will upload if everything is ok (though some other packages depending on it may fail if something is broken in API... as usual....)
Bad news. Building picard-tools with new htsjdk fails. Some ~40 tests are failing.
Tried to rebuild picard-tools with current htsjdk (to be sure it was not related to an other updated lib), and it works. So issue is with new htsjdk.
picard-tools and htsjdk are too "linked" with specific versions... ;-(
It is not a compilation issue, but testing results, so I cannot detect what is the problem for picard with this new release.
htsjdk code is up-to-date in git, but uploading this version would break picard-tools.
Olivier
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