Re: Help needed for discosnp
On 1/22/19 10:37 PM, Andreas Tille wrote:
> Hi Olivier,
>
> I've thought I'm so close to get at least discosnp[1] linked
> against gatb-core but there is a final thing missing:
>
>
> ...
> cd /build/discosnp-2.3.0/obj-x86_64-linux-gnu/tools/kissnp2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/kissnp2.dir/link.txt --verbose=1
> /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/discosnp-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/kissnp2.dir/src/Bubble.cpp.o CMakeFiles/kissnp2.dir/src/Filter.cpp.o CMakeFiles/kissnp2.dir/src/Kissnp2.cpp.o CMakeFiles/kissnp2.dir/src/main.cpp.o -o ../../bin/kissnp2 -lgatbcore -lhdf5
> /usr/bin/ld: cannot find -lhdf5
> collect2: error: ld returned 1 exit status
well, looks like hdf5 lib is not found at link time.
I gonna have a try
There is nobody in my lab anymore maintaining discosnp (don't know where
it is managed now).
Olivier
>
>
>
> My attempt[2] to sneak in some
>
> -L/usr/lib/x86_64-linux-gnu/hdf5/serial/
>
> which is obviously missing (if I add it to the '/usr/bin/c++ ' line it
> works) just failed. Any last tiny hint to get this done?
>
> Kind regards
>
> Andreas.
>
>
> [1] https://salsa.debian.org/med-team/discosnp
> [2] https://salsa.debian.org/med-team/discosnp/commit/6b87aec1e8d587e750fd1dd25d419269fc66ed7c
>
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
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