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Re: picard-tools: autopkgtest regression


On 1/17/19 9:25 AM, Paul Gevers wrote:
Source: picard-tools
Version: 2.18.23+dfsg-1
X-Debbugs-CC: debian-ci@lists.debian.org
User: debian-ci@lists.debian.org
Usertags: regression

Dear maintainers,

With a recent upload of picard-tools the autopkgtest of picard-tools
fails in testing when that autopkgtest is run with the binary packages
of picard-tools from unstable. It passes when run with only packages
from testing. In tabular form:
                       pass            fail
picard-tools           from testing    2.18.23+dfsg-1
versioned deps [0]     from testing    from unstable
all others             from testing    from testing

I copied some of the output at the bottom of this report.

Currently this regression is blocking the migration to testing [1]. Can
you please investigate the situation and fix it? If needed, please
change the bug's severity.

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[0] You can see what packages were added from the second line of the log
file quoted below. The migration software adds source package from
unstable to the list if they are needed to install packages from
picard-tools/2.18.23+dfsg-1. I.e. due to versioned dependencies or
breaks/conflicts.
[1] https://qa.debian.org/excuses.php?package=picard-tools

https://ci.debian.net/data/autopkgtest/testing/amd64/p/picard-tools/1717365/log.gz

autopkgtest [04:38:35]: test run-unit-test: [-----------------------
Error: Unable to initialize main class picard.cmdline.PicardCommandLine
Caused by: java.lang.NoClassDefFoundError:
org/broadinstitute/barclay/argparser/CommandLineProgramProperties
autopkgtest [04:38:36]: test run-unit-test: -----------------------]

Hi,

picard-tools depends on libbarclay-java. I see that it is has been removed from testing, this is why it fails. I wonder however

Previous picard-tools in testing did not depend on this library. Migration of picard-tools is currently blocked by this libbarclay-java bug (#906973)


Olivier




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Olivier Sallou
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