[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#872622: marked as done (ITP: bandage -- Bioinformatics Application for Navigating De novo Assembly Graphs Easily)

Your message dated Fri, 09 Nov 2018 14:10:47 +0000
with message-id <E1gL7Ul-000F7d-7m@fasolo.debian.org>
and subject line Bug#872622: fixed in bandage 0.8.1-1
has caused the Debian Bug report #872622,
regarding ITP: bandage -- Bioinformatics Application for Navigating De novo Assembly Graphs Easily
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
872622: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=872622
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Debian Med <debian-med@lists.debian.org>

* Package name    : bandage
  Version         : 0.8.1
  Upstream Author : Ryan R. Wick <rrwick@gmail.com>
* URL             : https://github.com/rrwick/Bandage/
* License         : GPL3
  Programming Lang: C++
  Description     : Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo
assemblers such as Velvet, SPAdes, MEGAHIT and others.

De novo assembly graphs contain not only assembled contigs but also the connections between
those contigs, which were previously not easily accessible. Bandage visualises assembly graphs,
with connections, using graph layout algorithms. Nodes in the drawn graph, which represent
contigs, can be automatically labelled with their ID, length or depth. Users can interact with
the graph by moving, labelling and colouring nodes. Sequence information can also be extracted
directly from the graph viewer. By displaying connections between contigs, Bandage opens up new
possibilities for analysing and improving de novo assemblies that are not possible by looking at
contigs alone.

More information and download links are on the Bandage website: rrwick.github.io/Bandage

The package is relevant to the field of genome assembly and will be maintained by the Debian Med
team.

--- End Message ---
--- Begin Message --- 
Source: bandage
Source-Version: 0.8.1-1

We believe that the bug you reported is fixed in the latest version of
bandage, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 872622@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated bandage package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Mon, 27 Aug 2018 11:41:01 +0200
Source: bandage
Binary: bandage
Architecture: source amd64
Version: 0.8.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 bandage    - Bioinformatics Application for Navigating De novo Assembly Graphs
Closes: 872622
Changes:
 bandage (0.8.1-1) unstable; urgency=medium
 .
   * Initial release (Closes: #872622)
Checksums-Sha1:
 bbd56ff7da51752cc88b5fccf21ab2bc5d653698 1990 bandage_0.8.1-1.dsc
 1485c2c1c3362f4fa6fb9e19cbde0993102e84d0 4798954 bandage_0.8.1.orig.tar.gz
 20daf9b7ef665f4f19c697737c604ba616937e60 6256 bandage_0.8.1-1.debian.tar.xz
 96b18711d697d87c9199d2ff1f4056c845df71f1 14413056 bandage-dbgsym_0.8.1-1_amd64.deb
 e13f6688a9c44eb2297f55c6094d1ba9c7c489f6 10210 bandage_0.8.1-1_amd64.buildinfo
 25a62928fad27576b84ab23f2508d855fd36de0f 947342 bandage_0.8.1-1_amd64.deb
Checksums-Sha256:
 b5cfdab7873e6572b569fe819d87074e65d647bda17e486714e93bcc402801e6 1990 bandage_0.8.1-1.dsc
 f160b695e03f0b254ffdccfa35b45dc8a733e8161d9928441edb8b63c8e44452 4798954 bandage_0.8.1.orig.tar.gz
 cf20aee474ef5220dbf5dafc3aee0165d17e5fc08d87f2a7ae7675672f5169a5 6256 bandage_0.8.1-1.debian.tar.xz
 7084cd292d8406297557e945cc13e67e5d69f000ec4afe8f9e6f3150fa7443cc 14413056 bandage-dbgsym_0.8.1-1_amd64.deb
 757f968787994c9de54bf22916e11be94829f03921e6e61d8133d021c57e6c46 10210 bandage_0.8.1-1_amd64.buildinfo
 fadf02fc897e2319bc1326a322a0f8e26d7f2ebf6796bf82193ff389c378ce8a 947342 bandage_0.8.1-1_amd64.deb
Files:
 01c45781a216c537e3afb69b104b3f16 1990 science optional bandage_0.8.1-1.dsc
 5a192ce1c6a6f47f686fd305426d8d2f 4798954 science optional bandage_0.8.1.orig.tar.gz
 2435964ed73dc86e2d8deacb58ed9fa8 6256 science optional bandage_0.8.1-1.debian.tar.xz
 79153fdf77f4c83f26e2c634a827a3ec 14413056 debug optional bandage-dbgsym_0.8.1-1_amd64.deb
 aaf29d25546e0b00c2f79329a4b3528d 10210 science optional bandage_0.8.1-1_amd64.buildinfo
 c6b86d2afec69ed5a5a7e006aa9d3ac5 947342 science optional bandage_0.8.1-1_amd64.deb

-----BEGIN PGP SIGNATURE-----
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=HG0a
-----END PGP SIGNATURE-----

--- End Message ---
Reply to: