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Autopkgtest fails if kmer is built with sbuild, but doesn't—with dpkg-buildpackage



Hi Afif, Hi Andreas,

I faced a problem while building kmer package and after that trying to test it with autopkgtest.

Initially, I built kmer in a sbuild chroot environment and run autopkgtest: it failed.
After that, I run autopkgtest so that it built the package itself from the local source provided and then run a test: it failed.
At last, I built the package using dpkg-buildpackage command and run autopkgtest: it passed.

I could not fully understand the cause of those previous fails, but it seems that sbuild and autopkgtest do something wrong while building. I have just committed the test I tried [1]. Could someone of you do the same to check if the error is reproducible? And if so, we could try to understand the cause of it together. Or maybe I do miss something about all of this.

The error I have looks like:
/usr/bin/../lib/atac/bin/statsGenerator -a /tmp/autopkgtest.nPpQt1/autopkgtest_tmp/results/EcolivsSent.atac -p /tmp/autopkgtest.nPpQt1/autopkgtest_tmp/results/stats/EcolivsSent -g A > /tmp/autopkgtest.nPpQt1/autopkgtest_tmp/results/stats/EcolivsSent.stats
Segmentation fault
Failed to ganerate statistics.

With regards,
Liubov
[1] https://salsa.debian.org/med-team/kmer/commit/5080553126487328686f72ec0ade5a83a47ec768


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