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Re: OMICtools of any use?



Hi David,

On 20.12.18 01:35, Carnë Draug wrote:
On Thu, 20 Dec 2018 at 00:04, Steffen Möller <steffen_moeller@gmx.de> wrote:
Hi David,

On 13.12.18 13:29, Andreas Tille wrote:
Hi David,

On Thu, Dec 13, 2018 at 12:15:11PM +0000, Carnë Draug wrote:
On Thu, 13 Dec 2018 at 08:11, Andreas Tille <andreas@fam-tille.de> wrote:
I noticed that you reverted a commit by Steffen Moeller in imagej adding
an OMICtools identifyer.  For the moment I do not think it is nice to
simply remove the work of fellow DDs without a consensus how to deal
with these data - thus I reverted that remove for the moment.
Please revert it again.  I did not remove it because I'm disliking
omics.  I reverted it because it's wrong.  I did it the first time
during the summer:

      https://salsa.debian.org/med-team/imagej/commit/415ff687c5

But it was added again.  I removed it yesterday for the same reason:

      https://salsa.debian.org/med-team/imagej/commit/a40be89995

In both cases I have explained on the commit message why it was wrong.
Uhmmm, sorry.  I should have read the full commit message.  I just have
read your e-mail here and have seen your last commit.  Sorry for the
noise.  I've now droped a Comment inside the YAML file (and I cross
fingers that my importer code is robust enough to not stumble about it
;-) ).
The OMICtools entry is about all versions. Just have a look at the
references to the literature they give. You can argue that it should
have two entries for two major versions. I don't see the need for that,
I must admit. In my reading, the assignment was/would be just fine. The
inaccuracies is not our's, it is OMICtools. And many, me included, in
this case regard it as a feature.

Hi Steffen

The OMICtools entry seems very specific for version 2.0.0. There's
even an entry line for version.
Right. I read this as max(all versions out there).
Both ImageJ 1 and 2 are still under development, are developed in
different places by different people, and even have different
licenses.  They are not just two major versions of the same software.
Ok.
ImageJ2 does encapsulate the ImageJ1 and the separation between
the two is really muddy.
I sense that OMICtools had felt that this is why there should be only
a single entry for it.
That entry would make more sense once ImageJ2 gets packaged
in Debian and someone has already packaged imglib2.

Let's see what happens.

Cheers,

Steffen





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