Re: Cmake help needed (Was: Unresolved ${java:Depends} (Was: IGV))
On Wed, Oct 24, 2018 at 01:03:50PM +0200, Olivier Sallou wrote:
>
> On 10/24/18 11:49 AM, Andreas Tille wrote:
> > On Wed, Oct 24, 2018 at 11:37:34AM +0200, Olivier Sallou wrote:
> >>> so gatb core may need to add in its -dev includes those thridparty code
> >>> headers too.....
> >> even with local patching to use missing gatdb thridparty includes, code
> >> fails to compile, I think it expects a specific version of gatb-core as
> >> failures are link to invalid number of arguments (given vs expected,
> >> type conversions etc....
> >>
> >>
> >> So i think that minia source code does not match gatb-core debian one,
> >> and fixing it may need quite a lot patches in minia etc...
> >>
> >> Else, minia should ship with its source code the expected gatdb code and
> >> be linked against it... :-(
> > Hmmmm, if I remember correctly you know the authors. Would you mind
> > asking them about this issue?
>
> code is not managed locally anymore, so no local contact anymore :-(
>
> but I remember that indeed tools based on gatb were close to specific
> gatb versions (maybe was not stable enough at some time....)
>
> cmake code from gatb explicitly specifies that gatb code should be in
> sub dir of tool that needs to be linked against.
Hmmmm, anyway - I'd love if we could find a (hopefully clean) way to
update discosnp and minia to the latest upstream versions. Its probably
not good to lag heavily behind upstream.
Kind regards
Andreas.
--
http://fam-tille.de
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