Hi all,
2018-04-19 14:16 GMT+02:00 Andreas Tille <andreas@an3as.eu>:
>> To answer Andreas, we, at OMICtools, could publish every month, the list of new packages available in Debian Med on our blog :
>> https://omictools.com/blog, if you feel it can helps.
Thanks Fabien for this. :-)
>> We just need a list of these tools and the corresponding OMICS_[0-9]{5} RRID, if present.
>
> I think about some method to automatically create such a list. Steffen,
> would you volunteer to assemble it manually for the moment?
Steffen, did you already perform this? I quickly wrote a small script
to do this (attached).
It could be useful (... or not :-)) before to do a cleanest work.
I also attached the generated list for March.
Best,
Dylan
abyss 2.0.3-1 OMICS_00006 andi 0.12-2 OMICS_09287 andi 0.12-3 OMICS_09287 ariba 2.11.1+ds-1 OMICS_17327 ariba 2.11.1+ds-2 OMICS_17327 bedops 2.4.32+dfsg-1 OMICS_00949 bedops 2.4.32+dfsg-2 OMICS_00949 blasr 5.3+0-2 OMICS_05134 canu 1.7+dfsg-1 OMICS_14592 centrifuge 1.0.3-1 OMICS_12217 coils 2002-6 OMICS_07850 diamond-aligner 0.9.19+dfsg-1 OMICS_08011 dwgsim 0.1.12-1 OMICS_00249 freebayes 1.1.0-2 OMICS_00059 gwyddion 2.50-1 OMICS_07548 gwyddion 2.50-2 OMICS_07548 jellyfish 2.2.8-2 OMICS_01056 jellyfish 2.2.8-3 OMICS_01056 kissplice 2.4.0-p1-3 OMICS_01321 libbiod 0.1.0-5 OMICS_20057 mhap 2.1.3+dfsg-1 OMICS_13515 phyutility 2.7.3+dfsg-1 OMICS_21687 plink1-9 1.90~b5.3-180221-1 OMICS_00206 prodigal 2.6.3-2 OMICS_01493 python-cutadapt 1.16-1 OMICS_01086 r-bioc-limma 3.34.9+dfsg-1 OMICS_00769 r-bioc-pcamethods 1.70.0-1 OMICS_14344 sambamba 0.6.7-1 OMICS_07586 samtools 1.7-2 OMICS_00090 sniffles 1.0.8+ds-1 OMICS_16283 stacks 2.0Beta9+dfsg-1 OMICS_01567 treeview 1.1.6.4+dfsg1-3 OMICS_01574
Attachment:
List_NewPackages_DebianMed.sh
Description: application/shellscript