On Thu, Oct 26, 2017 at 10:40:37AM -0700, Diane Trout wrote:
> pysam 0.12 just migrated to testing, but it depends on libhts2 1.5
> which is currently blocked by 871314 because libhts2 1.5 breaks pysam
> 0.11
That would be a serious bug in pysam (which btw is called python-pysam,
please always use the complete source package name, that saves time for
people to look it up). If it needs such (strict) dependency it should
have it expressed in the metadata. In turn, that might be a a bug in
htslib for not having an appropriate shlibs file.
And no, "samtools/bcftools/htslib/pysam generally need to be in sync,
regardless of soname changes" is not a thing: if such "synciness" is
needed, that also needs to be expressed by means of
Depends/Breaks/Conflicts/….
Please file a RC bug against python-pysam for being broken.
--
regards,
Mattia Rizzolo
GPG Key: 66AE 2B4A FCCF 3F52 DA18 4D18 4B04 3FCD B944 4540 .''`.
more about me: https://mapreri.org : :' :
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