Re: RRID -> SciCrunch (Was: [libtfbs-perl] 01/01: Update metadata; add SciCrunch ID.)
On 25.10.17 10:56, Michael Crusoe wrote:
> Sorry, I missed the bit where we are deprecating RRID. Can someone
> explain?
Because of https://arxiv.org/ftp/arxiv/papers/1707/1707.03659.pdf and
some web googling from which I gathered that the "Research Resource
IDentifiers" are not only provided by SciCrunch. Admittedly, I fail to
find that page now that I want to find it :o/
Personally, I could not care less, let those catalog providers fight
that out among themselves. However, I find that the notion of SciCrunch
clearly identifies the provenance of that information, while "RRID" to
me is more of a concept coined by (https://www.force11.org), not a
provider. And with several initiatives following the same purpose, I
found that by using SciCrunch not RRID, we would be the most
provider-neutral. And then again, it is only something local to the
Debian packaging, not publicly visible, so nobody should truly care and
the use of SciCrunch imho serves us best on a technical level.
The https://www.force2017.org/ starts today in Berlin which should
gather people who know best - is anybody following this list attending?
Steffen
>
> 2017-10-22 14:34 GMT+03:00 Steffen Möller <steffen_moeller@gmx.de
> <mailto:steffen_moeller@gmx.de>>:
>
> Args, I have only now updated
>
> https://wiki.debian.org/UpstreamMetadata
> <https://wiki.debian.org/UpstreamMetadata>
>
> to reference SciCrunch by their name.
>
> Many thanks and sorry
>
> Steffen
>
> On 22.10.17 12:20, Andreas Tille wrote:
> > Hi Charles,
> >
> > wasn't Steffen just doing heaps of uploads with
> >
> > - - Name: RRID
> > + - Name: SciCrunch
> >
> > As far as I understood we now are deprecating RRID. Should the
> > UDD importer warn about this?
> >
> > Kind regards
> >
> > ANdreas.
> >
> > On Sun, Oct 22, 2017 at 08:20:50AM +0000, Charles Plessy wrote:
> >> This is an automated email from the git hooks/post-receive script.
> >>
> >> plessy pushed a commit to branch master
> >> in repository libtfbs-perl.
> >>
> >> commit b070d2137c24b20e577107ae6b5bda6ef78e9800
> >> Author: Charles Plessy <plessy@debian.org
> <mailto:plessy@debian.org>>
> >> Date: Sun Oct 22 17:20:06 2017 +0900
> >>
> >> Update metadata; add SciCrunch ID.
> >> ---
> >> debian/upstream/metadata | 8 +++++---
> >> 1 file changed, 5 insertions(+), 3 deletions(-)
> >>
> >> diff --git a/debian/upstream/metadata b/debian/upstream/metadata
> >> index 5c3740b..900ee5a 100644
> >> --- a/debian/upstream/metadata
> >> +++ b/debian/upstream/metadata
> >> @@ -1,4 +1,4 @@
> >> -Contact: Boris.Lenhard at bccs.uib.no <http://bccs.uib.no>
> >> +Contact: b.lenhard at imperial.ac.uk <http://imperial.ac.uk>
> >> Homepage: http://tfbs.genereg.net/
> >> Name: TFBS
> >> Reference:
> >> @@ -12,6 +12,8 @@ Reference:
> >> Number: 8
> >> Pages: 1135-1136
> >> Year: 2002
> >> - URL:
> http://bioinformatics.oxfordjournals.org/cgi/content/abstract/18/8/1135
> <http://bioinformatics.oxfordjournals.org/cgi/content/abstract/18/8/1135>
> >> + URL:
> https://github.com/ComputationalRegulatoryGenomicsICL/TFBS.git
> <https://github.com/ComputationalRegulatoryGenomicsICL/TFBS.git>
> >> Repository: http://www.ii.uib.no/svn/lenhard/TFBS/
> <http://www.ii.uib.no/svn/lenhard/TFBS/>
> >> -Watch: http://tfbs.genereg.net/TFBS-(.*)\.tar\.gz
> <http://tfbs.genereg.net/TFBS-(.*)\.tar\.gz>
> >> +Registry:
> >> + - Name: RRID
> >> + Entry: SCR_015774
> >>
> >> --
> >> Alioth's /usr/local/bin/git-commit-notice on
> /srv/git.debian.org/git/debian-med/libtfbs-perl.git
> <http://git.debian.org/git/debian-med/libtfbs-perl.git>
> >>
> >> _______________________________________________
> >> debian-med-commit mailing list
> >> debian-med-commit@lists.alioth.debian.org
> <mailto:debian-med-commit@lists.alioth.debian.org>
> >>
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
> <http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit>
> >>
>
>
>
>
> --
> Michael R. Crusoe
> Co-founder & Lead,
> Common Workflow Language project <http://www.commonwl.org/>
> https://impactstory.org/u/0000-0002-2961-9670
> mrc@commonwl.org <mailto:mrc@commonwl.org>
> +1 480 627 9108
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