Review, please ! e: [med-svn] [rapmap] branch upstream updated (5fb69ea -> b8057c0)
Hello,
I have updated the rapmap package that I do not use myself.
If we have some user of this tool on this list, please kindly
give it a test run.
Best,
Steffen
On 22.10.17 21:28, Steffen Möller wrote:
> This is an automated email from the git hooks/post-receive script.
>
> moeller pushed a change to branch upstream
> in repository rapmap.
>
> from 5fb69ea New upstream version 0.4.0+dfsg
> new b8057c0 New upstream version 0.5.0+dfsg
>
> The 1 revisions listed above as "new" are entirely new to this
> repository and will be described in separate emails. The revisions
> listed as "adds" were already present in the repository and have only
> been added to this reference.
>
>
> Summary of changes:
> .drone.yml | 26 +
> .drone.yml.sig | 1 +
> .drone/build.sh | 20 +
> .drone/copy_build.sh | 10 +
> .drone/test_map.sh | 27 +
> CMakeLists.txt | 41 +-
> README.md | 24 +-
> cmake/TestQuasiMap.cmake | 24 +
> cmake/TestQuasiMapPerfectHash.cmake | 24 +
> include/IndexHeader.hpp | 13 +
> include/RapMapConfig.hpp | 4 +-
> include/RapMapSAIndex.hpp | 1 +
> include/RapMapUtils.hpp | 5 +-
> include/SACollector.hpp | 2 +-
> include/SparseHashSerializer.hpp | 2 +-
> include/concurrentqueue.h | 2 +-
> include/kseq.h | 218 +-
> include/picosha2.h | 359 +
> include/{sparsepp.h => sparsepp/spp.h} | 2787 +--
> include/sparsepp/spp_alloc.h | 830 +
> include/sparsepp/spp_bitset.h | 700 +
> include/sparsepp/spp_btree.h | 2211 ++
> include/sparsepp/spp_config.h | 760 +
> include/sparsepp/spp_memory.h | 121 +
> include/sparsepp/spp_smartptr.h | 56 +
> include/sparsepp/spp_stdint.h | 16 +
> include/sparsepp/spp_timer.h | 58 +
> include/sparsepp/spp_traits.h | 122 +
> include/sparsepp/spp_utils.h | 441 +
> sample_data/reads_1.fastq | 40000 +++++++++++++++++++++++++++++++
> sample_data/reads_2.fastq | 40000 +++++++++++++++++++++++++++++++
> sample_data/transcripts.fasta | 498 +
> scripts/Dockerfile | 22 +
> scripts/make-release.sh | 22 +-
> src/CMakeLists.txt | 12 +-
> src/RapMapSAIndex.cpp | 3 +-
> src/RapMapSAIndexer.cpp | 65 +-
> src/RapMapSAMapper.cpp | 6 +-
> 38 files changed, 87378 insertions(+), 2155 deletions(-)
> create mode 100644 .drone.yml
> create mode 100644 .drone.yml.sig
> create mode 100755 .drone/build.sh
> create mode 100755 .drone/copy_build.sh
> create mode 100755 .drone/test_map.sh
> create mode 100644 cmake/TestQuasiMap.cmake
> create mode 100644 cmake/TestQuasiMapPerfectHash.cmake
> create mode 100644 include/picosha2.h
> rename include/{sparsepp.h => sparsepp/spp.h} (67%)
> mode change 100644 => 100755
> create mode 100755 include/sparsepp/spp_alloc.h
> create mode 100755 include/sparsepp/spp_bitset.h
> create mode 100755 include/sparsepp/spp_btree.h
> create mode 100755 include/sparsepp/spp_config.h
> create mode 100755 include/sparsepp/spp_memory.h
> create mode 100755 include/sparsepp/spp_smartptr.h
> create mode 100755 include/sparsepp/spp_stdint.h
> create mode 100755 include/sparsepp/spp_timer.h
> create mode 100755 include/sparsepp/spp_traits.h
> create mode 100755 include/sparsepp/spp_utils.h
> create mode 100644 sample_data/reads_1.fastq
> create mode 100644 sample_data/reads_2.fastq
> create mode 100644 sample_data/transcripts.fasta
> create mode 100644 scripts/Dockerfile
>
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