Re: Python-pysam 0.12 released, could someone please care?
----- Mail original -----
> De: "Andreas Tille" <andreas@an3as.eu>
> À: "Debian Med Project List" <debian-med@lists.debian.org>
> Envoyé: Mardi 29 Août 2017 23:05:50
> Objet: Python-pysam 0.12 released, could someone please care?
Can't test now, but it seems that config.h should come from htslib, which is included in upstream (but we use debian package for build).
config.h is not available in libhts-dev (I think expected from HTSLIB_INCLUDE_DIR ind/rules).
Olivier
>
> Hi,
>
> I pushed new upstream version to Git but the build failed with:
>
>
> ...
> amd64-2.7/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes
> -Wno-sign-compare -Wno-error=declaration-after-statement
> bcftools/vcfplugin.c.pysam.c:27:10: fatal error: config.h: No such file or
> directory
> #include "config.h"
> ^~~~~~~~~~
> compilation terminated.
> error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
> E: pybuild pybuild:283: build: plugin distutils failed with: exit code=1:
> /usr/bin/python setup.py build
> ...
>
>
> Could someone please care since I'm a bit offline-ish this week.
>
> Kind regards
>
> Andreas.
>
> ----- Forwarded message from Andreas Tille <tille@debian.org> -----
>
> Date: Tue, 29 Aug 2017 21:04:00 +0000
> From: Andreas Tille <tille@debian.org>
> To: debian-med-commit@lists.alioth.debian.org
> Subject: [python-pysam] branch master updated (63edbcb -> 1c15d8e)
>
> This is an automated email from the git hooks/post-receive script.
>
> tille pushed a change to branch master
> in repository python-pysam.
>
> from 63edbcb New upstream version
> new 1c15d8e Patch applied upstream
>
> The 1 revisions listed above as "new" are entirely new to this
> repository and will be described in separate emails. The revisions
> listed as "adds" were already present in the repository and have only
> been added to this reference.
>
>
> Summary of changes:
> debian/patches/no-usage-test-without-tty.patch | 19 -------------------
> debian/patches/series | 1 -
> 2 files changed, 20 deletions(-)
> delete mode 100644 debian/patches/no-usage-test-without-tty.patch
> delete mode 100644 debian/patches/series
>
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