Re: CI for fastx-toolkit [Outreachy]
Le Mon, Jun 05, 2017 at 04:35:37PM -0700, Nadiya Sitdykova a écrit :
>
> When I run
>
> fastq_quality_filter -i galaxy/test-data/fastq_qual_filter1.fastq -q 33 -p
> 100
>
> I've got:
>
> fastq_quality_filter: bug: got empty array at fastq_quality_filter.c:97
Hi Nadiya,
FASTX-toolkit has an undocumented option `-Q` to set the quality offset. Thus:
$ fastq_quality_filter -Q64 -i galaxy/test-data/fastq_qual_filter1.fastq -q 33 -p 100
@CSHL_3_FC042AGLLWW:1:2:8:624
ACTGCAATTGGTTAATCCCCCTATATAGCGCTGTGG
+CSHL_3_FC042AGLLWW:1:2:8:624
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Have a nice day,
Charles
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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