Re: Heads up: bioperl release candidate
Le Thu, Jul 07, 2016 at 10:20:18AM -0400, Michael Crusoe a écrit :
>
> If someone would like to try updating the Debian package with the release
> candidate and testing it that would be useful:
>
> https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-1.007000_003.tar.gz
Hi Michael and everybody,
I tested the packaging of /BioPerl-1.007000_004.tar.gz, and it went fine. Some
regression tests could not be run as not all the optional modules and software
were installed on my laptop.
Our automated test did not report anything significant. Here is a copy of the
typos it found.
I: bioperl: spelling-error-in-manpage usr/share/man/man1/bp_biogetseq.1p.gz retrives retrieves
I: bioperl: spelling-error-in-manpage usr/share/man/man1/bp_extract_feature_seq.1p.gz specifed specified
I: bioperl: spelling-error-in-manpage usr/share/man/man1/bp_hivq.1p.gz retreive retrieve
I: bioperl: spelling-error-in-manpage ... use --no-tag-display-limit to see all (or pipe to a file/program)
W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_netinstall.1p.gz
W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_search2gff.1p.gz
W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_seqcut.1p.gz
I: libbio-perl-perl: spelling-error-in-manpage usr/share/man/man3/Bio::Align::AlignI.3pm.gz wont won't
I: libbio-perl-perl: spelling-error-in-manpage usr/share/man/man3/Bio::AnalysisI.3pm.gz refrence reference
I: libbio-perl-perl: spelling-error-in-manpage usr/share/man/man3/Bio::AnalysisI.3pm.gz folowing following
I: libbio-perl-perl: spelling-error-in-manpage ... use --no-tag-display-limit to see all (or pipe to a file/program)
W: libbio-perl-perl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::Index::Stockholm.3pm.gz
W: libbio-perl-perl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::OntologyIO::Handlers::BaseSAXHandler.3pm.gz
W: libbio-perl-perl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::OntologyIO::obo.3pm.gz
W: libbio-perl-perl: manpage-has-bad-whatis-entry ... use --no-tag-display-limit to see all (or pipe to a file/program)
W: libbio-perl-perl: manpage-has-errors-from-man usr/share/man/man3/Bio::SeqIO::bsml.3pm.gz 361: warning [p 4, 0.2i]: can't break line
Have a nice day,
Charles
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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