Indeed, looks like incompatible classes between versions
Olivier
Hi,
I've just injected surankco[1] which failed to build with:
jh_build --javacopts='-target 1.7' --javacopts='-source 1.7' surankco.jar src
find src -name *.java -and -type f -print0 | xargs -s 512000 -0 /usr/lib/jvm/default-java/bin/javac -g -cp /usr/share/java/htsjdk.jar:debian/_jh_build.surankco -d debian/_jh_build.surankco -target 1.7 -source 1.7
warning: [options] bootstrap class path not set in conjunction with -source 1.7
src/de/rki/ng4/surankco/data/Reads.java:30: error: incompatible types: Reads cannot be converted to FastqReads
new Qual(filename, this);
^
src/de/rki/ng4/surankco/data/Reads.java:33: error: incompatible types: Reads cannot be converted to FastqReads
new Fastq(filename, this, parameter);
^
Note: Some messages have been simplified; recompile with -Xdiags:verbose to get full output
2 errors
1 warning
Since upstream jar came with htsjdk-1.128.jar included and the build was
done agains libhtsjdk-java 2.0.1 I suspect an API change. Any hint how
to fix this?
Kind regards
Andreas.
[1] https://anonscm.debian.org/git/debian-med/surankco.git
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