Re: Worth packaging bio_assembly_refinement?
Hi
Thank you for looking into this.
Bio_assembly_refinement does not need to be a standalone package.
Nishadi
On 08/03/2016 08:36, "Martin Hunt" <mh12@sanger.ac.uk> wrote:
>Hi,
>
> From a Circlator point of view, I think it would be good to eventually
>have the relevant bits of bio_assembly_refinement put into Circlator.
>Circlator only uses one piece of functionality from
>bio_assembly_refinement.
>
>I don't know what else bio_assembly_refinement is being used for, so
>can't comment on that as a stand-alone package.
>
>Best,
>Martin
>
>
>On 08/03/2016 07:21, Sascha Steinbiss wrote:
>> Hi Afif,
>>
>> first of all thanks for looking at Circlator, which was on my list as
>>well :)
>>
>>>> I'm looking into packaging Circlator, which depends on the Sanger
>>>> program bio_assembly_refinement. Looking into it, I'm wondering
>>>>whether
>>>> this is a tool that will just get folded into circlator eventually. Do
>>>> you think it's worth packaging it separately?
>>> I should add that the alternative would be to bundle it into the
>>> circlator package as a multi-orig tarball. The question is better
>>> rephrased as whether it's worth packaging bio_assembly_refinement
>>> /separately/.
>> Yes, I noticed the dependency on bio_assembly_refinement as well and I
>>was¹t sure what part of it is really needed, since it¹s description
>>sounded a bit similar to Circlator itself. I didn¹t have the time yet to
>>look into it in more detail yet.
>> I have cc¹d Martin Hunt, the Circlator author, and Nishadi de Silva,
>>the bio_assembly_refinement author, on this email and they might be able
>>to say more.
>>
>> Many thanks,
>> Sascha
>
>
>--
>Dr. Martin Hunt
>Senior Bioinformatician
>Pathogen Informatics
>Wellcome Trust Sanger Institute
>Cambridge
>UK
>
>Tel: +44 (0)1223 834244
>
--
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