According to their sourceforge page a new release is imminent & they are moving to GitHub (yay!)https://sourceforge.net/p/jung/discussion/252062/thread/d0540e45/#cc6aI posted the following message (which is awaiting approval):
"Glad to hear about the new release and move to GitHub!FYI, the Debian-Med team has a package of Jung in progress right now; we made a patch to replace the unofficial Collections 1.5 and the official Apache Collection 4 release:Followed by a general transformation in> xargs sed -i -e \'s/org.apache.commons.collections15/org.apache.commons.collections4/' \-e 's/org.apache.commons.collections4.Buffer/java.util.Queue/' \-e 's/org.apache.commons.collections4.buffer.UnboundedFifoBuffer/java.util.LinkedList/' \-e 's/UnboundedFifoBuffer/LinkedList/' \-e 's/Buffer</Queue</' \-e 's/LazyMap.decorate/LazyMap.lazyMap/' \-e 's/MapTransformer.getInstance/MapTransformer.mapTransformer/' \-e 's/ChainedTransformer.getInstance/ChainedTransformer.chainedTransformer/' \-e 's/CloneTransformer.getInstance/CloneTransformer.cloneTransformer/' \-e 's/CloneTransformer.<Point2D>getInstance/CloneTransformer.cloneTransformer/' \-e 's/OrPredicate.getInstance/OrPredicate.orPredicate/' \-e 's/TruePredicate.getInstance/TruePredicate.truePredicate/' ;I see that the jung-3d package isn't present on GitHub. We had to drop that due to license issues with> ./jung-3d-2.0.1-sources/edu/uci/ics/jung/visualization3d/control/*> * You acknowledge that this software is not designed, licensed or> * intended for use in the design, construction, operation or> * maintenance of any nuclear facility.This restriction on use violates the Debian Free Software Guidelines so I'm dropping it from Debian for now.Will the jung-3d package have a future release as well?"On Thu, Jan 14, 2016 at 10:23 AM Michael R. Crusoe <mcrusoe@msu.edu> wrote:The offending licence is only in 8 filesmcrusoe@mrcdev:~/debian/libjung-java$ find . -type f | xargs grep nucl./jung-3d-2.0.1-sources/edu/uci/ics/jung/visualization3d/control/PickZoomBehavior.java: * maintenance of any nuclear facility../jung-3d-2.0.1-sources/edu/uci/ics/jung/visualization3d/control/MouseRotate.java: * maintenance of any nuclear facility../jung-3d-2.0.1-sources/edu/uci/ics/jung/visualization3d/control/PickRotateBehavior.java: * maintenance of any nuclear facility../jung-3d-2.0.1-sources/edu/uci/ics/jung/visualization3d/control/PickTranslateBehavior.java: * maintenance of any nuclear facility../jung-3d-2.0.1-sources/edu/uci/ics/jung/visualization3d/control/MouseZoom.java: * in the design, construction, operation or maintenance of any nuclear./jung-3d-2.0.1-sources/edu/uci/ics/jung/visualization3d/control/PickMouseBehavior.java: * maintenance of any nuclear facility../jung-3d-2.0.1-sources/edu/uci/ics/jung/visualization3d/control/MouseTranslate.java: * maintenance of any nuclear facility../jung-3d-2.0.1-sources/edu/uci/ics/jung/visualization3d/control/MouseWheelZoom.java: * maintenance of any nuclear facility.
I don't need these for trinityrnaseq's Butterfly so I'm going to strip them out of the source while we wait for a response from upstream. If someone else needs them we can make a separate non-free source package.