Bug#834592: marked as done (ITP: hisat2 -- graph-based alignment of short nucleotide reads to many genomes)
Your message dated Fri, 19 Aug 2016 08:00:09 +0000
with message-id <E1baein-0001Ve-Ku@franck.debian.org>
and subject line Bug#834592: fixed in hisat2 2.0.4-1
has caused the Debian Bug report #834592,
regarding ITP: hisat2 -- graph-based alignment of short nucleotide reads to many genomes
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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834592: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=834592
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Debian Med team <debian-med@lists.debian.org>
* Package name : hisat2
Version : 2.0.4
Upstream Author : HISAT2 team <hisat2.genomics@gmail.com>
* URL : https://ccb.jhu.edu/software/hisat2/index.shtml
* License : GPL-3+
Programming Lang: Perl, Python, C++
Description : graph-based alignment of short nucleotide reads to many genomes
HISAT2 is a fast and sensitive alignment program for mapping next-generation
sequencing reads (both DNA and RNA) to a population of human genomes (as well
as against a single reference genome). Based on an extension of BWT for graphs
a graph FM index (GFM) was designed and implementd. In addition to using
one global GFM index that represents a population of human genomes, HISAT2
uses a large set of small GFM indexes that collectively cover the whole genome
(each index representing a genomic region of 56 Kbp, with 55,000 indexes
needed to cover the human population). These small indexes (called local
indexes), combined with several alignment strategies, enable rapid and
accurate alignment of sequencing reads. This new indexing scheme is called a
Hierarchical Graph FM index (HGFM).
hisat2 will be team-maintained by the Debian Med team.
--- End Message ---
--- Begin Message ---
Source: hisat2
Source-Version: 2.0.4-1
We believe that the bug you reported is fixed in the latest version of
hisat2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 834592@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <michael.crusoe@gmail.com> (supplier of updated hisat2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 17 Aug 2016 05:15:40 -0700
Source: hisat2
Binary: hisat2
Architecture: source amd64
Version: 2.0.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
hisat2 - graph-based alignment of short nucleotide reads to many genomes
Closes: 834592
Changes:
hisat2 (2.0.4-1) unstable; urgency=medium
.
* Initial release. (Closes: #834592)
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