List of packages without testsuite fetched from UDD (Was: Coding period starting soon ...)
[Moving discussion to the list again.]
Hi Canberk,
On Mon, May 16, 2016 at 01:45:14PM +0300, Canberk Koç wrote:
> I look for bugs but honestly i don't get what is going on i'm trying to
> figure it our now.
Please ask for more details what might be unclear. For me it is hard to
know what might be a stumbling stone for you if I do not hear anything.
Any question is fine - I'll try my best to answer in detail.
> In coding session you said you can give me a sort of program list which are
> urgent. I wait for them also.
Ahh, please do not hesitate to ask if you are waiting for input from me.
I'm a bit in a hurry and I can not quickly give any priorisation - but I
can easily give a list of packages in question that have or are missing
a test suite. We have UDD (the Ultimate Debian Database) and if I run
the following query:
psql udd -c "select distinct source, release, testsuite from sources where source in (select distinct source from packages where package in (select package from blends_dependencies where blend = 'debian-med' and task = 'bio')) and release = 'sid' order by source;"
I get the attached list of packages in the Debian Med biology task.
Just check what package does not have an autopkgtest and that sounds
somehow known to you. I'll enhance the query to merge in results of
popularity contest to make sure we will tackle frequently used packages
first.
> Further i don't know what to do for now :-)
Well, you once started with a single test for one of our packages. I
assumed you would continue with other packages. If I should rather name
the packages than letting you pick freely from the list - that's fine.
I'll do so in the next 24h.
Kind regards
Andreas.
--
http://fam-tille.de
source | release | testsuite
--------------------------+---------+-------------
abacas | sid |
abyss | sid |
acedb | sid |
adun.app | sid |
aegean | sid | autopkgtest
aevol | sid |
alien-hunter | sid |
alter-sequence-alignment | sid |
altree | sid |
amap-align | sid |
ampliconnoise | sid |
andi | sid |
anfo | sid |
aragorn | sid | autopkgtest
arb | sid |
arden | sid |
artemis | sid |
artfastqgenerator | sid | autopkgtest
augustus | sid | autopkgtest
autodocksuite | sid | autopkgtest
autodocktools | sid |
autodock-vina | sid |
axe-demultiplexer | sid | autopkgtest
ball | sid |
bamtools | sid |
barrnap | sid | autopkgtest
bcftools | sid | autopkgtest
beagle | sid | autopkgtest
beast-mcmc | sid |
bedtools | sid | autopkgtest
berkeley-express | sid |
biomaj | sid |
biomaj-watcher | sid |
bio-rainbow | sid |
blasr | sid |
blimps | sid |
bowtie | sid | autopkgtest
bowtie2 | sid | autopkgtest
boxshade | sid | autopkgtest
brig | sid |
bwa | sid |
cain | sid |
cassiopee | sid |
cdbfasta | sid |
cd-hit | sid |
cgview | sid |
circlator | sid | autopkgtest
circos | sid | autopkgtest
clearcut | sid |
clonalframe | sid |
clustalo | sid |
clustalw | sid |
clustalx | sid |
cluster3 | sid |
codonw | sid |
coils | sid |
concavity | sid |
conservation-code | sid |
cufflinks | sid |
daligner | sid |
dawg | sid |
dazzdb | sid |
dialign | sid |
dialign-t | sid |
dindel | sid |
discosnp | sid |
disulfinder | sid |
dnaclust | sid |
dssp | sid |
dwgsim | sid |
ea-utils | sid |
ecopcr | sid |
edtsurf | sid |
eigensoft | sid | autopkgtest
embassy-domainatrix | sid |
embassy-domalign | sid |
embassy-domsearch | sid |
embassy-phylip | sid |
emboss | sid |
emboss-explorer | sid |
epcr | sid |
exonerate | sid |
falconkit | sid | autopkgtest
fastaq | sid | autopkgtest
fastdnaml | sid |
fastlink | sid |
fastml | sid |
fastqc | sid |
fasttree | sid |
fastx-toolkit | sid |
ffindex | sid |
figtree | sid |
filo | sid |
fitgcp | sid |
flexbar | sid |
freecontact | sid |
fsm-lite | sid |
gamgi | sid |
garlic | sid |
gasic | sid |
gbrowse | sid |
gdpc | sid |
genometools | sid | autopkgtest
gentle | sid |
gff2aplot | sid |
gff2ps | sid |
ghemical | sid |
giira | sid |
glam2 | sid |
gmap | sid |
grinder | sid |
gromacs | sid |
gubbins | sid |
gwama | sid | autopkgtest
harvest-tools | sid |
hhsuite | sid |
hmmer | sid |
hmmer2 | sid |
htslib | sid |
hyphy | sid |
idba | sid |
igv | sid |
indelible | sid |
infernal | sid |
ipig | sid |
iqtree | sid |
iva | sid | autopkgtest
jaligner | sid |
jalview | sid |
jellyfish | sid | autopkgtest
jmodeltest | sid |
jmol | sid |
kalign | sid |
khmer | sid | autopkgtest
kineticstools | sid |
king-probe | sid |
kissplice | sid |
kmc | sid | autopkgtest
kmer-tools | sid |
kraken | sid |
last-align | sid |
libncl | sid |
librg-utils-perl | sid |
logol | sid |
loki | sid |
ltrsift | sid |
macs | sid |
macsyfinder | sid |
mafft | sid | autopkgtest
mapsembler2 | sid |
maq | sid |
maqview | sid |
massxpert | sid |
maude | sid |
mauve-aligner | sid |
melting | sid |
metastudent | sid |
metastudent-data | sid |
metastudent-data-2 | sid |
mhap | sid |
microbegps | sid |
microbiomeutil | sid | autopkgtest
minia | sid |
miniasm | sid | autopkgtest
minimap | sid | autopkgtest
mipe | sid |
mira | sid |
mlv-smile | sid |
mobyle | sid |
mobyle-programs | sid |
mobyle-tutorials | sid |
mothur | sid |
mrbayes | sid |
mrs | sid |
mummer | sid |
murasaki | sid |
muscle | sid |
mustang | sid | autopkgtest
nanopolish | sid | autopkgtest
ncbi-blast+ | sid |
ncbi-seg | sid |
ncbi-tools6 | sid |
neobio | sid |
njplot | sid |
norsnet | sid |
norsp | sid |
openms | sid |
paml | sid |
paraclu | sid |
parsinsert | sid |
pbalign | sid |
pbbarcode | sid | autopkgtest
pbdagcon | sid |
pbgenomicconsensus | sid | autopkgtest
pbsim | sid | autopkgtest
pbsuite | sid | autopkgtest
pdb2pqr | sid |
perlprimer | sid |
perm | sid |
phybin | sid |
phylip | sid |
phyml | sid |
phyutility | sid |
picard-tools | sid |
piler | sid |
placnet | sid |
plasmidomics | sid |
plast | sid | autopkgtest
plink | sid | autopkgtest
plink1.9 | sid | autopkgtest
plip | sid | autopkgtest
poa | sid |
populations | sid |
poretools | sid |
prank | sid |
predictnls | sid |
predictprotein | sid |
prime-phylo | sid |
primer3 | sid |
proalign | sid |
probabel | sid |
probalign | sid |
probcons | sid |
proda | sid |
prodigal | sid |
profbval | sid |
profisis | sid |
profnet | sid |
profphd | sid |
profphd-utils | sid |
proftmb | sid |
progressivemauve | sid |
proteinortho | sid | autopkgtest
prottest | sid |
pycorrfit | sid |
pymol | sid |
pynast | sid | autopkgtest
pyscanfcs | sid |
python-cogent | sid |
python-dendropy | sid |
qiime | sid |
raccoon | sid |
rasmol | sid |
raster3d | sid |
rate4site | sid |
raxml | sid |
ray | sid |
r-bioc-annotate | sid |
r-bioc-aroma.light | sid | autopkgtest
r-bioc-biostrings | sid | autopkgtest
r-bioc-cummerbund | sid | autopkgtest
r-bioc-ebseq | sid | autopkgtest
r-bioc-edger | sid | autopkgtest
r-bioc-genefilter | sid | autopkgtest
r-bioc-gviz | sid |
r-bioc-hilbertvis | sid | autopkgtest
r-bioc-limma | sid | autopkgtest
r-bioc-rtracklayer | sid |
r-cran-ape | sid |
r-cran-bio3d | sid |
r-cran-boolnet | sid |
r-cran-genabel | sid |
r-cran-phangorn | sid |
r-cran-qtl | sid | autopkgtest
r-cran-seqinr | sid |
r-cran-vegan | sid | autopkgtest
rdp-alignment | sid |
rdp-classifier | sid |
rdp-readseq | sid |
readseq | sid |
reapr | sid | autopkgtest
relion | sid |
repeatmasker-recon | sid |
reprof | sid |
rnahybrid | sid | autopkgtest
rna-star | sid |
roary | sid | autopkgtest
r-other-mott-happy | sid |
rsem | sid |
rtax | sid |
saint | sid |
salmon | sid |
samtools | sid | autopkgtest
scrm | sid |
scythe | sid |
seaview | sid |
seer | sid |
seqan | sid |
seq-gen | sid |
seqprep | sid | autopkgtest
seqtk | sid |
sga | sid |
sibsim4 | sid |
sickle | sid |
sift | sid |
sigma-align | sid |
sim4 | sid |
smalt | sid | autopkgtest
smrtanalysis | sid |
snap | sid | autopkgtest
snap-aligner | sid |
snpomatic | sid | autopkgtest
snp-sites | sid | autopkgtest
soapdenovo | sid |
soapdenovo2 | sid |
sortmerna | sid |
spaced | sid |
spades | sid | autopkgtest
sprai | sid |
spread-phy | sid |
squizz | sid |
sra-sdk | sid |
ssake | sid | autopkgtest
stacks | sid |
staden | sid |
staden-io-lib | sid | autopkgtest
subread | sid | autopkgtest
suitename | sid |
sumaclust | sid |
sumatra | sid |
surankco | sid |
swarm-cluster | sid |
tantan | sid | autopkgtest
t-coffee | sid |
theseus | sid | autopkgtest
tigr-glimmer | sid |
tm-align | sid |
tophat | sid |
toppred | sid | autopkgtest
transdecoder | sid | autopkgtest
transrate-tools | sid |
transtermhp | sid |
tree-puzzle | sid |
treeview | sid |
treeviewx | sid |
trimmomatic | sid |
trinityrnaseq | sid | autopkgtest
uc-echo | sid |
ugene | sid |
varna | sid |
varscan | sid |
vcftools | sid |
velvet | sid | autopkgtest
velvetoptimiser | sid |
vsearch | sid | autopkgtest
wise | sid | autopkgtest
zalign | sid |
(347 Zeilen)
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