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Re: Role of plasmidSPAdes



Dear Andreas,

Thank you for your interest in SPAdes and plasmidSPAdes.

plasmidSPAdes will be integrated into the next "full" SPAdes release
as a proper mode. Unfortunately, our release schedule is not always
aligned to the schedule of various conferences / journals, so we had
to do such "code dumps" :(

On Thu, Apr 21, 2016 at 12:29 PM, Andreas Tille <andreas@an3as.eu> wrote:
> Hi,
>
> I wonder what your plan might be to integrate the functionality of
> plasmidSPAdes[1] into SPAdes.  I had a short look into the download
> tarball of plasmidSPAdes and it looks like large chunks of code from an
> older SPAdes version (3.5) with some additional code are inside.  Since
> a user asked for a Debian package I wonder whether there is some merge
> into SPAdes with some possible additional options is planned in the long
> term.
>
> Kind regards
>
>      Andreas.
>
> [1] http://spades.bioinf.spbau.ru/plasmidSPAdes/
>     http://biorxiv.org/content/early/2016/04/17/048942
>
> --
> http://fam-tille.de



-- 
With best regards, Anton Korobeynikov
Faculty of Mathematics and Mechanics, Saint Petersburg State University


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