Re: [MoM] Fwd: Outreachy project (CI for all biological applications inside Debian)

[Andreas Tille <andreas@an3as.eu>]

Hi Tanya and Anna,

I have not heard from you both since some time.  I wonder how your progress
to find some target package and try to reproduce package building might be
as a first step to add an autopkgtest.

Kind regards

      Andreas.

On Mon, Mar 21, 2016 at 07:03:56PM +0100, Andreas Tille wrote:
> Hi Tanya,
> 
> On Mon, Mar 21, 2016 at 07:31:13PM +0300, merlettaia wrote:
> > I've decided to start with Concavity.
> 
> Fine.
> 
> > Is there a sample of a well-test-covered package?
> 
> I'm not sure about what is a recommended example, but here are several
> packages that have tests inside packaging git if I call the following in
> the dir where I keep my Debian Med Git repositories:
> 
>   find . -type d -name tests | grep debian/tests | sort
> ./aegean/debian/tests
> ./artfastqgenerator/debian/tests
> ./art-nextgen-simulation-tools/debian/tests
> ./axe-demultiplexer/debian/tests
> ./bcftools/debian/tests
> ./beast2-mcmc/debian/tests
> ./beast-mcmc/debian/tests
> ./bedtools/debian/tests
> ./bowtie2/debian/tests
> ./eigensoft/debian/tests
> ./falconkit/debian/tests
> ./fast5/debian/tests
> ./fastaq/debian/tests
> ./genometools/debian/tests
> ./gwama/debian/tests
> ./jellyfish/debian/tests
> ./khmer/debian/tests
> ./kmc/debian/tests
> ./libcereal/debian/tests
> ./libtabixpp/debian/tests
> ./microbiomeutil/debian/tests
> ./miniasm/debian/tests
> ./minimap/debian/tests
> ./nanopolish/debian/tests
> ./partitionfinder/debian/tests
> ./pbbarcode/debian/tests
> ./pbgenomicconsensus/debian/tests
> ./pbsim/debian/tests
> ./permute/debian/tests
> ./pipasic/debian/tests
> ./plast/debian/tests
> ./plink1.9/debian/tests
> ./plink2/debian/tests
> ./proteinortho/debian/tests
> ./python-biom-format/debian/tests
> ./python-biopython/debian/tests
> ./python-cobra/debian/tests
> ./python-csb/debian/tests
> ./python-pbcommand/debian/tests
> ./python-pbcore/debian/tests
> ./python-pbh5tools/debian/tests
> ./python-pysam/debian/tests
> ./python-ruffus/debian/tests
> ./python-screed/debian/tests
> ./python-skbio/debian/tests
> ./r-bioc-biobase/debian/tests
> ./r-bioc-biocgenerics/debian/tests
> ./r-bioc-cummerbund/debian/tests
> ./r-bioc-ebseq/debian/tests
> ./r-bioc-edger/debian/tests
> ./r-bioc-limma/debian/tests
> ./r-cran-ggplot2/debian/tests
> ./r-cran-metamix/debian/tests
> ./r-cran-plyr/debian/tests
> ./r-cran-reshape2/debian/tests
> ./r-cran-rsqlite/debian/tests
> ./r-cran-scales/debian/tests
> ./r-cran-vegan/debian/tests
> ./reapr/debian/tests
> ./samtools/debian/tests
> ./snpomatic/debian/tests
> ./snp-sites/debian/tests
> ./spades/debian/tests
> ./spdlog/debian/tests
> ./subread/debian/tests
> ./tabix/debian/tests
> ./toppred/debian/tests
> ./transdecoder/debian/tests
> ./trinityrnaseq/debian/tests
> ./trnascan-se/debian/tests
> ./velvet/debian/tests
> ./vsearch/debian/tests
> 
> 
> Feel free to ask for more details if this hint does not turn out has
> very helpful (I'm a bit busy with real life things currently).
> 
> Hope this helps
> 
>       Andreas.
> 
> -- 
> http://fam-tille.de
> 
> 

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