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Bug#692332 closed by Andreas Tille <tille@debian.org> (Bug#692332: fixed in sga 0.10.13-1)

This is an automatic notification regarding your Bug report
which was filed against the wnpp package:

#692332: RFP: sga -- de novo genome assembler based on the concept of string graphs

It has been closed by Andreas Tille <tille@debian.org>.

Their explanation is attached below along with your original report.
If this explanation is unsatisfactory and you have not received a
better one in a separate message then please contact Andreas Tille <tille@debian.org> by
replying to this email.


-- 
692332: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=692332
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Source: sga
Source-Version: 0.10.13-1

We believe that the bug you reported is fixed in the latest version of
sga, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 692332@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated sga package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Wed, 09 Sep 2015 10:44:48 +0200
Source: sga
Binary: sga
Architecture: source amd64
Version: 0.10.13-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 sga        - de novo genome assembler that uses string graphs
Closes: 692332
Changes:
 sga (0.10.13-1) unstable; urgency=low
 .
   * Initial release (Closes: #692332)
Checksums-Sha1:
 120df8360540035dd0db54975b49d2d74585747e 2005 sga_0.10.13-1.dsc
 36d5a23a393c968120988dd94bad9d561b0e0c4e 6553197 sga_0.10.13.orig.tar.gz
 ba532c45e14ccae057056df1711a0a3ac2efa501 209544 sga_0.10.13-1.debian.tar.xz
 bdbc1965ea4c856db1727356de3b070abd1deca3 928838 sga_0.10.13-1_amd64.deb
Checksums-Sha256:
 69fa4ecc5027eedf4c6bdb1e545097daa73dc6ff3b5ff4a80d4fbc725fea4682 2005 sga_0.10.13-1.dsc
 77859ab233980594941aa4c4cb5c2cbe1f5c43f2519f329c3a88a97865dee599 6553197 sga_0.10.13.orig.tar.gz
 d1313e08c180db83bde9bef7968fbeefcd30672968c50f44f953ba52275bed31 209544 sga_0.10.13-1.debian.tar.xz
 fe358941b228b86b58b22097c0efc6324b03731e92906e434c6b1d61f1e1f733 928838 sga_0.10.13-1_amd64.deb
Files:
 99e8b29cd3e984eea0302274d1549a86 2005 science optional sga_0.10.13-1.dsc
 d4f6aefc48c940dba96cc6513649ecdd 6553197 science optional sga_0.10.13.orig.tar.gz
 1a2f42dcc89c5c01e3866b599f3882d9 209544 science optional sga_0.10.13-1.debian.tar.xz
 3f83fb343728bbae88f215799212263e 928838 science optional sga_0.10.13-1_amd64.deb

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--- End Message ---
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: "Michael R. Crusoe" <mcrusoe@asu.edu>

* Package name    : sga
  Version         : 0.9.35
  Upstream Author : Jared Simpson <js18@sanger.ac.uk>
* URL             : https://github.com/jts/sga
* License         : GPLv3
  Programming Lang: C++
  Description     : A de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph
formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently
find overlaps between sequence reads. The core algorithms are described in this paper:

http://bioinformatics.oxfordjournals.org/cgi/content/abstract/26/12/i367


--- End Message ---
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