Re: Packaging gwamar for Debian
Hi Michał,
thanks for your very quick reply. I'm perfectly fine with your
schedule.
Thanks for your cooperation
Andreas.
On Sat, Nov 21, 2015 at 08:10:58PM +0100, Michał Woźniak wrote:
> Hi Andreas,
> I'm delighted to hear that!
>
> Thanks for all the comments too, here are my short answers:
>
> 0. sure I will change the approach
> 1. The intended license is GPL v3. If there is no explicite statement
> I will add it as part of point 2.
> 2. I will put some effort in the next couple of days and will try to
> fix the build quickly both on Python 2 and 3.
> 3. I will investigate the possible approaches and will do it better
> 4. I will investigate this as part of point point 2.
>
> I estimate this will take me about a week or two is that fine?
>
> Best wishes,
> Michal
>
> 2015-11-21 18:53 GMT+01:00 Andreas Tille <andreas@an3as.eu>:
> > Hello,
> >
> > I'm writing you on behalf of the Debian Med team that has the objective
> > to package all free software that is relevant in Biology and Medicine
> > for official Debian.
> >
> > I came across GWAMAR[1] and started the packaging in Debian Git[2].
> > When doing so I stumbled upons some issues in the download archive[3]:
> >
> > 0. Just a comment: It would be more convenient to find versioned
> > download archives rather than versioned directories. The
> > rationale behind this is that you have files with the same name
> > but different content.
> >
> > 1. I did not found any explicite license statement neither at the
> > website nor inside the code. Could you be so kind to clarify
> > this?
> >
> > 2. At Bitbucket[4] you write:
> > This software is written in Python, thus Python 2 or 3 is
> > required to run GWAMAR.
> > When trying to build with Python3 I've git some errors
> > (basically in print statements with Python2 syntax. Please
> > let me know if you are interested in patches fixing this.
> >
> > 3. I noticed that the default config file in the download archive
> > contains several private PATH settings. I patched these to
> > the Debian locations in the packaging git[5]. It would be
> > great if you could change the default config file to a more
> > neutral setting.
> >
> > 4. Finally I endet up by an error message
> >
> > File "a1_save_details_scores_all.py", line 161, in <module>
> > input_fh = open(input_fn)
> > IOError: [Errno 2] No such file or directory: 'datasets/mtu173/exP//res_profiles.txt'
> >
> > I have no idea how to deal with this since this file is
> > neither in the download tarball nor can I see it in the
> > repository at Bitbucket.
> >
> > I hope you like the intend to package GWAMAR for Debian and can
> > help with these issues.
> >
> > Kind regards
> >
> > Andreas.
> >
> > [1] http://bioputer.mimuw.edu.pl/gwamar/
> > [2] git://anonscm.debian.org/debian-med/gwamar.git
> > [3] http://bioputer.mimuw.edu.pl/gwamar/software/gwamar_v1.14/gwamar.zip
> > [4] https://bitbucket.org/mimowo/gwamar
> > [5] https://anonscm.debian.org/cgit/debian-med/gwamar.git/tree/debian/patches/adapt_debian_locations_of_binaries.patch
> >
> > --
> > http://fam-tille.de
>
--
http://fam-tille.de
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