Re: Trinityrnaseq status
Hello,
On السبت 22 آب 2015 12:34, Michael Crusoe wrote:
> On Sat, Aug 22, 2015 at 6:49 AM Andreas Tille <andreas@an3as.eu
> <mailto:andreas@an3as.eu>> wrote:
>
> Hi,
>
> On Sat, Aug 22, 2015 at 12:57:20AM +0000, Michael Crusoe wrote:
> >
> > trinityrnaseq: waiting on libjung-free-java, rsem, express, and
> jaligner.
> > Otherwise all the tests run successfully for me.
>
> I really hope that jaligner will make it soon - no idea why several
> packages later in the queue made it way faster.
>
>
> On the upside it is now the second oldest package in queue so hopefully
> it will get some attention soon.
I've added it as a blocker to the trinityrnaseq ITP to express the
dependency. jaligner also turns out to be a dependency of wgs-assembler,
so I've expressed that as well.
>
> > Any and all assistance you and the group can provide for the above
> would be
> > greatly appreciated!
>
> Please be more verbose if you see tasks I could do to support this.
>
>
> Do have experience in what incantations it takes to add the hardening
> build flags to recalcitrant packages?
Sometimes, upstream build systems don't support CPPFLAGS, so I find that
putting the CPPFLAGS in with the CFLAGS/CXXFLAGS helps to get the
hardening flags passed to the build system.
something like this in d/rules:
CFLAGS := $(CPPFLAGS) $(CFLAGS)
I haven't checked your package, so I don't know if this is your problem
exactly.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
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