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Not able to pull dependencies for tests ran on ci.debian.net.



Good evening everybody,

I am probably missing something obvious, but I have simple problem with the
samtools package, where the regression tests depend on the "tabix" package for
the "bgzip" command, and fail on ci.debian.net despite my attempt to set the
dependency properly...

    $ curl http://anonscm.debian.org/cgit/debian-med/samtools.git/plain/debian/tests/control
    Tests: samtools-test
    Depends: @, tabix
    Restrictions: allow-stderr
    
    $ curl --silent --compressed http://ci.debian.net/data/packages/unstable/amd64/s/samtools/20150607_002702.autopkgtest.log.gz  | tail -n15
    Setting up samtools-test (1.1-1) ...
    Setting up adt-satdep (0) ...
    Processing triggers for libc-bin (2.19-18) ...
    adt-run [00:27:23]: test samtools-test: [-----------------------
    The command failed [32512]: cat /tmp/YHnFtIRjxI/bgzip.dat | bgzip -ci -I/tmp/YHnFtIRjxI/bgzip.dat.gz.gzi > /tmp/YHnFtIRjxI/bgzip.dat.gz
    out:
    err:/bin/bash: bgzip: command not found
    
     at ./test.pl line 67.
    	main::error("The command failed [32512]: cat /tmp/YHnFtIRjxI/bgzip.dat | b"..., "out:\x{a}", "err:/bin/bash: bgzip: command not found\x{a}\x{a}") called at ./test.pl line 138
    	main::cmd("cat /tmp/YHnFtIRjxI/bgzip.dat | bgzip -ci -I/tmp/YHnFtIRjxI/b"...) called at ./test.pl line 300
    	main::test_bgzip(HASH(0x1951e78)) called at ./test.pl line 35
    adt-run [00:27:24]: test samtools-test: -----------------------]
    adt-run [00:27:24]: test samtools-test:  - - - - - - - - - - results - - - - - - - - - -
    samtools-test        FAIL non-zero exit status 127

Does anybody spot what I have been missing ?

Have a nice day

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan


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