Hello,I've checked out #753490 as Andreas pointed out, but the problem reported there is largely with samtools. If the samtools patch applies, then I think we can revisit applying the pysam patch here.
I think python-pysam is now ready to go. Charles, would you be able to review and upload, please?
Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name