Re: Help needed to update to latest fastqc
On 05/04/2015 10:52 PM, Andreas Tille wrote:
> Hi Olivier,
>
> On Mon, May 04, 2015 at 06:41:10PM +0200, Olivier Sallou wrote:
>> File fastqc/uk/ac/babraham/FastQC/Sequence/Fast5File.java imports
>> HDFS5Factory from ch.systemsx.cisd.hdf5
>>
>> but jhdf5.jar only contains files like: ncsa/hdf/hdf5lib/... and no
>> HDF5Factory
>>
>> this jhdf5 is not the correctl lib (or an other one is needed).
> I guess its this one:
>
> https://svncisd.ethz.ch/doc/hdf5/hdf5-8.10/ch/systemsx/cisd/hdf5/package-summary.html
Looks fine.
However it is not clear about the difference with hdf5 lib in Debian.
would mean to package an additional hdf5 lib... ?
>
>> In addition, in debian/patches/build.xml is missing commons-math3.jar to
>> be added in pathelement for classpath.
>>
>> for duplicate classes, I don't yet, but hdf5 first need to be resolved.
> If I do not hear from you I'll try the URL above tomorrow (if nobody
> else might beat me which would for sure welcome as always).
>
> Kind regards
>
> Andreas.
>
--
Olivier Sallou
IRISA / University of Rennes 1
Campus de Beaulieu, 35000 RENNES - FRANCE
Tel: 02.99.84.71.95
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