[PATCH 04/10] fix include names

[johnhommer@gmail.com]

From: Andrei Zavada <johnhommer@gmail.com>

---
 MUMmer3.20/src/tigr/show-diff.cc                  | 1 +
 chaining/synchain-mugsy.cpp                       | 7 +++----
 mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp | 2 +-
 3 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/MUMmer3.20/src/tigr/show-diff.cc b/MUMmer3.20/src/tigr/show-diff.cc
index 421f20d..ea252d2 100644
--- a/MUMmer3.20/src/tigr/show-diff.cc
+++ b/MUMmer3.20/src/tigr/show-diff.cc
@@ -14,6 +14,7 @@
 #include <cstdlib>
 #include <cassert>
 #include <climits>
+#include <algorithm>
 using namespace std;
 
 
diff --git a/chaining/synchain-mugsy.cpp b/chaining/synchain-mugsy.cpp
index 669f017..1877ce4 100644
--- a/chaining/synchain-mugsy.cpp
+++ b/chaining/synchain-mugsy.cpp
@@ -80,8 +80,7 @@
 #include <list>
 #include <bitset>
 #include <algorithm>
-#include <ext/hash_set> //__gnu_cxx namespace
-//#include <tr1/unordered_set>
+#include <set>
 
 #include <boost/graph/graphviz.hpp>
 #include <boost/graph/adjacency_list.hpp>
@@ -101,11 +100,11 @@
 #include <boost/graph/dijkstra_shortest_paths.hpp>
 #include <boost/graph/graph_traits.hpp>
 #include <boost/graph/properties.hpp>
-#include <boost/property_map.hpp>
+#include <boost/property_map/property_map.hpp>
 #include <boost/graph/breadth_first_search.hpp>
 
 #include <boost/graph/edmonds_karp_max_flow.hpp>
-#include <boost/graph/kolmogorov_max_flow.hpp>
+#include <boost/graph/boykov_kolmogorov_max_flow.hpp>
 #include <boost/graph/push_relabel_max_flow.hpp>
 
 #include <boost/graph/adjacency_list.hpp>
diff --git a/mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp b/mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp
index 7a3ba64..177468e 100644
--- a/mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp
+++ b/mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp
@@ -68,7 +68,7 @@ time_t lasttime;
 #include <boost/graph/properties.hpp>
 
 #include <boost/graph/edmonds_karp_max_flow.hpp>
-#include <boost/graph/kolmogorov_max_flow.hpp>
+#include <boost/graph/boykov_kolmogorov_max_flow.hpp>
 #include <boost/graph/push_relabel_max_flow.hpp>
 
 #include <boost/graph/adjacency_list.hpp>
-- 
2.3.5