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Re: Update on Trinityrnaseq packaging

Hi Michael,

On Tue, Feb 17, 2015 at 03:46:09AM +0000, Michael Crusoe wrote:
> On Mon Feb 16 2015 at 11:09:37 AM Andreas Tille <andreas@an3as.eu> wrote:
> > > dependencies needing review & uploading to Debian:
> > > - [ ] libjung-java
> Ready for sponsoring

Uhmm, only for contrib since it depends libcolt-java. :-( :-( :-(
This libcolt issue is beating us over and over again.  My last longer
explanation was here:


For me it seems pretty clear that for some interested Java programmer
this issue could be solved in a dcent time frame by upgrading to
freehep.  Alternatively some interested non-programmer could try even
harder to push the original author changing the broken license.  But as
long as this is not solved at least four of our packages in interest
will end up in contrib only (which all the nasty consequences). :-(
> Has a dependency that I just packaged: r-bioc-ebseq (also needed for
> Trinity); of course that had its own dependency: r-cran-blockmodeling. Both
> are ready for sponsoring.

r-cran-blockmodeling uploaded to new.  It would be safer to ping me
again about r-bioc-ebseq once r-cran-blockmodeling might have hit
unstable to make sure I will not loose the chain of dependency amongst
the other things I'm doing.
> rsem itself needs manpages & testing

> > > - [ ] express
> Ready for sponsoring

I'll have a look.

Thanks for your effort



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