Re: Scientists please raise your opinion (Was: Bug#737913: exonerate and dnaclust: error when trying to install together)
Hi,
On Fri, Feb 07, 2014 at 04:39:36PM +0100, Andreas Tille wrote:
> On Fri, Feb 07, 2014 at 03:33:51PM +0000, Daniel Barker wrote:
> > >
> > > /usr/lib/dnaclust/fastasor
> > >
> > >The scripts which are calling the executable are all using
> > >
> > > "$dnaclust_path/fastasort"
> > >
> > >so perhaps the later might fit best?
> >
> > I agree. So far as I can tell, fastasort does not seem to be invoked
> > directly by the user. It can go anywhere that works.
>
> Great. Since this now seem to be sorted out I wonder if there is any
> volunteer from the Debian Med sprint who is keen on fixing his first
> bug. If you would like to but have no idea how to do it, feel free to
> ask. If there is no volunteer I might do it myself but IMHO the
> educational effect would be better if somebody else would step in.
If you wanted to step hin here I'm sorry you are late - the fix is
uploaded. ;-)
I also noticed that there is an additional name space conflict with
the package mira-assembler and
/usr/bin/fastaselect
I solved this in an identical manner and moved this to
/usr/lib/dnaclust/fastaselect
and patched the scripts accordingly.
It would be great if somebody could provide some test data we could
add as a test suite.
Kind regards
Andreas.
--
http://fam-tille.de
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