Re: HTSlib code copy in python-pysam.

[Charles Plessy <plessy@debian.org>]

Le Wed, Aug 20, 2014 at 11:10:32AM +0200, Andreas Tille a écrit :
> 
> --- a/setup.py
> +++ b/setup.py
> @@ -32,7 +32,7 @@ IS_PYTHON3 = sys.version_info[0] >= 3
>  #         pysam.
>  # external: use shared libhts.so compiled outside of
>  #           pysam
> -HTSLIB = "separate"
> +HTSLIB = "external"
>  HTSLIB_DIR = []

Thanks for the hint.  For the moment it causes the build to fail, but I note
that the version of HTSlib in Pysam is much older than the latest upstream
release, so my gut feeling is to keep an eye and see if the situation improves
in the next releases of Pysam.

Have a nice day,

-- 
Charles