Re: Bowtie and bowtie2? (Was: Bug#756780: [Help] Need help for architecture specific code (Was: Bug#756780: bowtie: FTBFS almost everywhere)]
Le Mon, Aug 04, 2014 at 10:58:17AM +0200, Andreas Tille a écrit :
>
> ----- Forwarded message from Paul Wise <pabs@debian.org> -----
> ...
> BTW, what is the difference between bowtie and bowtie2? Do we need
> both in the archive?
> ----- End forwarded message -----
>
> Could anybody please answer this from a users point of view?
Hi Andreas,
according to the description, Bowtie 1 is tailored for sequence lengths of ~ 35
basepairs, while Bowtie 2 is better for lengths of 50 or more.
According to their home pages, both had recent upsream releases.
I would recommend to keep both.
Cheers,
Charels
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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