On 04/11/2014 11:52 PM, Andreas Tille wrote:
Hi Alex, On Fri, Apr 11, 2014 at 11:45:11AM +0200, Alex Mestiashvili wrote:Cool, thank you a lot, we are one step further!Perhaps it makes sense to contact upstream and propose the patch (in Git) and ask for further help. Would you volunteer to do this?
Done: https://groups.google.com/forum/#!topic/tuxedo-tools-users/TCyKinjd2Wc though my English skills for a polite message are not very good :) Forgot to CC to debian-med, but if there will be any activity I'll forward.
Still I think that the upstream should try to fix it or we should reintroduce back SeqAn-1.3.This should be the last resort - but yes, if nothing else helps we should probably do this. Kind regards Andreas.
but may be than we simply can leave seqan-1.3 in the tophat's source ?I think at some point tophat will switch to seqan-1.4 too ( probably when seqan devs vill release 1.6 :) ), but we can win the time and have working tophat in the distribution before this happens.
Best regards, Alex