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Re: No relro when building from inside a Git package ?



Le Wed, Nov 20, 2013 at 10:24:29PM +0100, Andreas Tille a écrit :
> 
> without having checked out the repository and diving into it:  Can you
> post a diff of the two build logs?

Hi Andreas,

here it is (attached).  Could the problem be a side effect of the test suite ?

Cheers,

-- 
Charles
--- with-.git	2013-11-21 09:32:14.244499056 +0900
+++ without-.git	2013-11-21 09:34:12.908497923 +0900
@@ -150,15 +150,6 @@
 dh_auto_test
 	make -j1 test
 make[2]: Entering directory `/tmp/htslib'
-echo '#define HTS_VERSION "debian/0.2.0_rc3-1-38-g9469458"' > version.h
-gcc -g -Wall -O2 -I. -DSAMTOOLS=1 -c -o hts.o hts.c
-ar -rc libhts.a kfunc.o knetfile.o kstring.o bgzf.o faidx.o hfile.o hfile_net.o hts.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/md5.o cram/open_trace_file.o cram/pooled_alloc.o cram/sam_header.o cram/string_alloc.o cram/thread_pool.o cram/vlen.o cram/zfio.o
-ranlib libhts.a
-gcc -pthread  -o test/fieldarith test/fieldarith.o libhts.a  -lz
-gcc  -o test/hfile test/hfile.o libhts.a  -lz
-gcc -pthread  -o test/test_view test/test_view.o libhts.a  -lz
-gcc -pthread  -o test/test-vcf-api test/test-vcf-api.o libhts.a  -lz
-gcc -pthread  -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a  -lz
 test/fieldarith test/fieldarith.sam
 test/hfile
 cd test && ./test_view.pl
@@ -456,11 +447,11 @@
 Failures  0
 cd test && ./test.pl
 test_vcf_api:
-	/tmp/htslib/test/test-vcf-api /tmp/Vvj_N60T4W/test-vcf-api.bcf
+	/tmp/htslib/test/test-vcf-api /tmp/cUKPv4vctM/test-vcf-api.bcf
 .. ok
 
 test_vcf_sweep:
-	/tmp/htslib/test/test-vcf-sweep /tmp/Vvj_N60T4W/test-vcf-api.bcf
+	/tmp/htslib/test/test-vcf-sweep /tmp/cUKPv4vctM/test-vcf-api.bcf
 .. ok
 
 
@@ -495,10 +486,6 @@
 	make -j1 install DESTDIR=/tmp/htslib/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr PACKAGE_VERSION=0.2.0\~rc4-1
 make[2]: Entering directory `/tmp/htslib'
 mkdir -p /tmp/htslib/debian/tmp/usr/include/htslib /tmp/htslib/debian/tmp/usr/lib /tmp/htslib/debian/tmp/usr/share/man/man5
-echo '#define HTS_VERSION "0.2.0~rc4-1"' > version.h
-gcc -g -Wall -O2 -I. -DSAMTOOLS=1 -fpic -c -o hts.pico hts.c
-gcc -shared -Wl,-soname,libhts.so.0  -o libhts.so kfunc.pico knetfile.pico kstring.pico bgzf.pico faidx.pico hfile.pico hfile_net.pico hts.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/files.pico cram/mFILE.pico cram/md5.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/sam_header.pico cram/string_alloc.pico cram/thread_pool.pico cram/vlen.pico cram/zfio.pico  -lz
-ln -sf libhts.so libhts.so.0
 install -p -m 644 libhts.so /tmp/htslib/debian/tmp/usr/lib/libhts.so.0.2.0~rc4-1
 ln -sf libhts.so.0.2.0~rc4-1 /tmp/htslib/debian/tmp/usr/lib/libhts.so
 ln -sf libhts.so.0.2.0~rc4-1 /tmp/htslib/debian/tmp/usr/lib/libhts.so.0
@@ -660,7 +647,7 @@
 dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below
 dpkg-gensymbols: warning: debian/libhts0/DEBIAN/symbols doesn't match completely debian/libhts0.symbols
 --- debian/libhts0.symbols (libhts0_0.2.0~rc4-1_amd64)
-+++ dpkg-gensymbolskXM3kh	2013-11-21 09:32:00.312499189 +0900
++++ dpkg-gensymbols4DQT53	2013-11-21 09:34:08.056497969 +0900
 @@ -230,6 +230,7 @@
   cram_huffman_encode_int0@Base 0.2.0~rc3
   cram_huffman_encode_int@Base 0.2.0~rc3
@@ -675,12 +662,12 @@
 	rm -f debian/htslib-test/DEBIAN/shlibs
    dh_shlibdeps
 	dpkg-shlibdeps -Tdebian/libhts0.substvars debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0\~rc4-1
-dpkg-shlibdeps: warning: symbol exp used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries
-dpkg-shlibdeps: warning: symbol pthread_join used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries
-dpkg-shlibdeps: warning: symbol pthread_kill used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries
 dpkg-shlibdeps: warning: symbol pthread_create used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries
+dpkg-shlibdeps: warning: symbol exp used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries
 dpkg-shlibdeps: warning: symbol lgamma used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries
+dpkg-shlibdeps: warning: symbol pthread_kill used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries
 dpkg-shlibdeps: warning: symbol log used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries
+dpkg-shlibdeps: warning: symbol pthread_join used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries
 	install -o 0 -g 0 -d debian/libhts-dev/DEBIAN
 	install -o 0 -g 0 -d debian/htslib-test/DEBIAN
    dh_installdeb

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