Could not build picard-tools version 1.100

[Charles Plessy <plessy@debian.org>]

Hello everybody,

I tried to update picard-tools to version 1.100, unfortunately, it makes an
error.  It may be trivial for people knowing Java, so please let me know of a
workaround (or commit it directly).

The update made the following change in the build.xml file.

     <property environment="env"/>
+    <property name="java6.home" value="${env.JAVA6_HOME}"/>
 
     <condition  property="isUnix">
         <os family="unix"/>
@@ -75,6 +77,10 @@
             <pathelement path="${classpath}"/>
             <pathelement location="${classes}"/>
         </path>
+
+        <path id="java6.lib.ref">
+            <fileset dir="${java6.home}/lib" includes="*.jar"/>
+        </path>
     </target>

And it leads to the following error.

compile-sam-jdk:
    [mkdir] Created dir: /«PKGBUILDDIR»/classes

BUILD FAILED
/«PKGBUILDDIR»/build.xml:109: The following error occurred while executing this line:
/«PKGBUILDDIR»/build.xml:476: /«PKGBUILDDIR»/${env.JAVA6_HOME}/lib does not exist.

Cheers,

Charles

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan