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Re: [Debian-med-packaging] Bug#705139: soapdenovo2: FTBFS on non-amd64: linker errors



On Wed, Apr 10, 2013 at 04:49:22PM +0200, Olivier Sallou wrote:
> what is procedure to fix this ? I need to upload a new source (to remove
> .a files).
> 
> Should I increase upstream version?

<upstreamversion>+dfsg  ?

> thanks

Hope this helps

       Andreas.

> 
> Olivier
> 
> On 04/10/2013 04:39 PM, Aaron M. Ucko wrote:
> > Source: soapdenovo2
> > Version: 223-2
> > Severity: serious
> > Justification: fails to build from source
> >
> > Hi, Olivier.
> >
> > Builds of soapdenovo2 on ia64 and kfreebsd-amd64 both failed with
> > linker errors.
> >
> > The ia64 build failed with
> >
> >   /usr/bin/ld: skipping incompatible ./inc/libbam.a when searching for -lbam
> >   /usr/bin/ld: cannot find -lbam
> >   collect2: ld returned 1 exit status
> >   make[2]: *** [SOAPdenovo] Error 1
> >
> > Please get rid of the prebuilt libbam.a (a DFSG violation!) and build
> > depend on libbam-dev.
> >
> > The kfreebsd-amd64 build didn't reject that libbam.a outright, but
> > reported undefined references to several bam* and sam* symbols, and
> > for that matter to a handful of aio_* symbols, which I suspect you
> > could resolve by linking against -laio from libaio-dev.
> >
> > Could you please take a look?  You can find the full logs on
> > buildd.debian.org:
> >
> > https://buildd.debian.org/status/fetch.php?pkg=soapdenovo2&arch=ia64&ver=223-2&stamp=1365543888
> > https://buildd.debian.org/status/fetch.php?pkg=soapdenovo2&arch=kfreebsd-amd64&ver=223-2&stamp=1365543478
> >
> > BTW, directing upstream's build system to indicate which commands it's
> > actually running would make it easier to tell what's going wrong.
> >
> > _______________________________________________
> > Debian-med-packaging mailing list
> > Debian-med-packaging@lists.alioth.debian.org
> > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
> 
> -- 
> Olivier Sallou
> IRISA / University of Rennes 1
> Campus de Beaulieu, 35000 RENNES - FRANCE
> Tel: 02.99.84.71.95
> 
> gpg key id: 4096R/326D8438  (keyring.debian.org)
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> 
> 
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> 

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