Upcomming changes in the Debian Med tasks
Hi,
due to the fact that the octave package will be now packaged without
version number I would like to upload new metapackages soonish (as soon
as octave will have hit testing) to fix #667588. In preparation of this
upload I started the metapackage building process which verifies the
state of testing at this very moment to fullfill our dependencies
specified in the tasks files.
The changes in the tasksel input file debian-med-tasks.desc (see below)
nicely reflect what was added to the tasks. This are quite some new
packages which has been possible thanks to your work!
Please note that this is *not* the final state for wheezy. I will
reupload the metapackages *after* the freeze (in coordination with
release managers) to be sure we can fully reflect the release state
in our metapackages.
Kind regards and thanks to you all for your fine work
Andreas.
----- Forwarded message from tille@users.alioth.debian.org -----
Date: Thu, 05 Apr 2012 06:51:05 -0000
From: tille@users.alioth.debian.org
To: blends-commit@lists.alioth.debian.org
Subject: r3265 - in /projects/med/trunk/debian-med:
debian-med-tasks.desc debian/changelog debian/control tasks/physics
X-Spam_score: -2.3
Author: tille
Date: Thu Apr 5 06:51:03 2012
New Revision: 3265
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3265
Log:
Try fixing octave dependency but need to wait with upload until octave package will have hit testing
Modified:
projects/med/trunk/debian-med/debian-med-tasks.desc
projects/med/trunk/debian-med/debian/changelog
projects/med/trunk/debian-med/debian/control
projects/med/trunk/debian-med/tasks/physics
Modified: projects/med/trunk/debian-med/debian-med-tasks.desc
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian-med-tasks.desc?rev=3265&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian-med-tasks.desc (original)
+++ projects/med/trunk/debian-med/debian-med-tasks.desc Thu Apr 5 06:51:03 2012
@@ -48,15 +48,18 @@
embassy-domainatrix
embassy-domsearch
clustalx
+ clustalo
clustalw
mothur
bowtie
+ bowtie2
dotur
transtermhp
last-align
maq
ssake
velvet
+ qiime
infernal
rnahybrid
adun.app
@@ -95,6 +98,7 @@
samtools
bedtools
filo
+ gassst
r-bioc-hilbertvis
r-other-mott-happy
seq-gen
@@ -110,10 +114,19 @@
squizz
clonalframe
jellyfish
+ ballview
+ pynast
raxml
mlv-smile
+ cd-hit
+ r-bioc-cummerbund
+ grinder
+ jalview
+ reprof
tm-align
- jalview
+ proftmb
+ hhsuite
+ ffindex
ncbi-blast+
abacas
profnet-bval
@@ -125,9 +138,12 @@
profnet-prof
profnet-snapfun
profphd-net
+ profphd-utils
+ profphd
ampliconnoise
disulfinder
populations
+ librg-utils-perl
vcftools
Task: med-bio-dev
@@ -160,10 +176,16 @@
libbiococoa-dev
libstaden-read-dev
libsrf-dev
+ libzerg0-dev
+ libzerg-perl
+ librg-reprof-bundle-perl
seqan-dev
libbio-mage-utils-perl
+ libchado-perl
+ libpal-java
libjebl2-java
r-bioc-biobase
+ libffindex0-dev
Task: med-bio-ngs
Section: debian-med
@@ -173,6 +195,7 @@
Relevance: 10
Packages: list
mothur
+ qiime
mira-assembler
Task: med-bio-phylogeny
@@ -209,7 +232,6 @@
mrbayes
figtree
populations
- spread
Task: med-cloud
Section: debian-med
@@ -227,6 +249,14 @@
raster3d
python-cogent
+Task: med-cms
+Section: debian-med
+Description: Debian Med content management systems
+ Here you can find software that is useful to build a
+ content management system for medical care.
+Relevance: 10
+Packages: list
+
Task: med-data
Section: debian-med
Description: Debian Med drug databases
@@ -237,7 +267,6 @@
Key:
med-data
Packages: list
- freediams
python-hl7
Task: med-dental
@@ -316,16 +345,18 @@
caret
libgdcm-tools
dicom3tools
+ imagevis3d
+ odin
dicomscope
pixelmed-java
gofigure2
ginkgocadx
openslide-tools
+ volview
mricron
voxbo
mrtrix
mriconvert
- connectomeviewer
sigviewer
tifffile
openmeeg-tools
@@ -358,6 +389,7 @@
python-nipype
python-nitime
libvia-dev
+ odin
libcv-dev
libvxl1-dev
libteem1-dev
@@ -367,9 +399,9 @@
libopenmeeg-dev
python-nibabel
libgdf-dev
+ python-pyxnat
python-dipy
libbiosig-dev
- libactiviz.net5.6-cil
python-cfflib
libopenslide-dev
@@ -409,7 +441,6 @@
Packages: list
paw++
paw
- octave3.2
r-base
Task: med-practice
@@ -425,8 +456,8 @@
gnumed-server
libchipcard-tools
ginkgocadx
- freediams
r-cran-medadherence
+ clinica
Task: med-psychology
Section: debian-med
Modified: projects/med/trunk/debian-med/debian/changelog
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/changelog?rev=3265&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/changelog (original)
+++ projects/med/trunk/debian-med/debian/changelog Thu Apr 5 06:51:03 2012
@@ -1,10 +1,12 @@
-debian-med (1.11) UNRELEASED; urgency=low
+debian-med (1.11) unstable; urgency=low
* debian/control(.stub):
Standards-Version: 3.9.3 (no changes needed)
* debian/control:
Usual changes of dependency based on the resolving of new packages
in Debian as specified in the tasks files
+ * tasks/physics: s/octave3.2/octave/
+ Closes: #667588
-- Andreas Tille <tille@debian.org> Thu, 05 Apr 2012 08:30:44 +0200
...
--
http://fam-tille.de
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