Building picard-tools (Re: snappy-java_1.0.4.1~dfsg-1_amd64.changes ACCEPTED into unstable).

[Charles Plessy <plessy@debian.org>]

Le Mon, Apr 02, 2012 at 09:47:45PM +0000, Debian FTP Masters a écrit :
> 
> Changes:
> snappy-java (1.0.4.1~dfsg-1) unstable; urgency=low
>  .
>   * Initial release. (Closes: #636181)

Thanks Andreas !

now I have problems building Picard:

Buildfile: /home/charles/debian/debian-med/picard-tools/build.xml

init:

compile-sam-jdk:
    [mkdir] Created dir: /home/charles/debian/debian-med/picard-tools/classes
    [javac] /home/charles/debian/debian-med/picard-tools/build.xml:98: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
    [javac] Compiling 106 source files to /home/charles/debian/debian-med/picard-tools/classes
    [javac] SnappyLoader.java:27: cannot find symbol
    [javac] symbol  : class LoadSnappy
    [javac] location: package org.xerial.snappy
    [javac] import org.xerial.snappy.LoadSnappy;
    [javac]                         ^
    [javac] SnappyLoader.java:83: cannot find symbol
    [javac] symbol  : variable LoadSnappy
    [javac] location: class net.sf.samtools.util.SnappyLoader
    [javac]             if (!LoadSnappy.load()) {
    [javac]                  ^
    [javac] Note: Some input files use or override a deprecated API.
    [javac] Note: Recompile with -Xlint:deprecation for details.
    [javac] Note: Some input files use unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.
    [javac] 2 errors

BUILD FAILED
/home/charles/debian/debian-med/picard-tools/build.xml:98: Compile failed; see the compiler error output for details.


Does anyone has an idea ?

Cheers,

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan