Re: Some (minimal?) Java help needed (Was: Bug#670353: ITP: fastqc -- quality control for next generation sequencing data)

[Andreas Tille <andreas@an3as.eu>]

On Thu, Nov 08, 2012 at 09:26:27AM +0100, Olivier Sallou wrote:
> 
> > uk/ac/babraham/FastQC/FastQCApplication.class is missing in the jar file
> > /usr/share/fastqc/fastqc.jar (you can check content with jar -tf
> > /usr/share/fastqc/fastqc.jar)
> To get it work, you should fix the /usr/bin/fastq line 183 on exec to get:
> 
> exec $java_bin,@java_args,"-jar","/usr/share/fastqc/fastqc.jar", @files;
> 
> instead of
> 
> exec $java_bin,@java_args, "uk.ac.babraham.FastQC.FastQCApplication",
> @files;
 
This sounds somehow obvious and works (even if I wonder why my manual
call at command line which exactly did what you suggested was (and is)
failing).

Thanks for your help

       Andreas.

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